Well it appears that Naruto's Secret will become a story and not a one shot.

Thank you everyone.

Like Always I do not own Naruto

Chapter 1:

Shock

Ino's jaw hung open as she looked on with shock along with the others. "But, how?" She question.

"I don't know." Answer Sakura as Sasuke took it upon himself to find out what the hell was going on.

"Naruto." Said Sasuke.

Hearing her name Naruto looked up to the one who said her name. "Hey Sasuke. Can we talk later." She told him. As she looked back to her family.

"We just want to know what's going on. Whose kids are those?" Question Sasuke.

Shikamaru looked over at the Uchiha. "They are our children." He told him as he turned back to his sons who wanted to be held by him.

Sasuke's mouth dropped as he returned to the others.

"What did he tell you?" Asked Kakashi.

"They are their children." Said Sasuke as he didn't know how to feel about what he was told.

Yoshino was hugging Ryoko. "Oh, you are so cute. A mini me of your mommy."

Ryoko giggled and hugged her grandmother back. "Nana. Nana." She said with more giggles.

Kakashi's single eye widen as his book fell to the ground. "What did you say?" He question.

"Naruto and Shikamaru had kids." Sasuke as he was becoming annoyed now.

Before anyone knew what happen Kakashi was now standing right next to Shikamaru with a dark aura around him. Before Kakashi could say or do anything Jiraiya grabbed him by his neck. "You will leave him alone. If you do anything to him, I will never allow you to have my new book and I will tell all the bookstores in the village to never sell you one of my books again." Said Jiraiya.

Kakashi paled and nodded his head as he moved away from the little happy family.

Just then Tsunade appeared at the front gates. "What is going on here?" She question as she looked at all her teams gathered gawking at the young couple and their children.

"Baa-chan." Said Naruto as she grinned looking at Tsunade as she stood up.

"Nana-nade." Said all three kids.

A huge smile appeared on Tsunade's face. "Oh, my little kits." She said as she dropped down as the three toddlers ran over to her. This was a name she began calling the triples as they had two whiskers on each other cheeks and they are as mischievous as a young fox kit. They jumped into her arms and she hugged them tight. "I've missed you all so much." She told them.

"They missed you as well Baa-chan." Said Naruto with a smile. "But I need to get to my apartment and get things packed to take things to my new home." She said as everyone looked at her weird. This even made Shikamaru look at her.

"I was just going to ask you to move in with me." Said Shikamaru as he smiles at her lazily.

Naruto turned and smiled at him. "I was just going to ask you to move in with me as well." She told him.

His parents watched with amusement. "So, what now?" Asked Yoshino.

"Well I was given my Mom's family Clan Estate and it isn't far from the Nara Clan's land." Said Naruto as she smiled sheepishly.

"The only Estate near our is the Uzumaki Estate." Said Shikamaru.

"That is our new home." Said Naruto as she grinned.

Shikamaru looked over at his parents. "So, if both Clan Estates are near and next to each other. Then could we connect both lands?" He asked his parents.

"This is something you and Naruto will need to talk about. For when you become Clan head and as she is the Last Uzumaki she is already Clan head and by the looks of it. She has already made it to Chunin." Said Shikaku.

Naruto smiled. "Your dad is right about that. For we do have a lot of things to talk about." She told Shikamaru as she stood up and walked over to Tsunade to get her children back. "Also, Baa-chan I need to speak to you about something that happen about 4 month ago."

Tsunade looked at Naruto as she let go of the triples as they took off running back to Yoshino and Shikaku.

"Naruto we will take the kids and babysit while you go talk with Lady Tsunade." Said Yoshino as she was holding Shikari and Shikaku had both Ryoko and Ryuu in his arms.

Naruto looked over at them and smiled softly. "Thank you. I do need a little break to handle for a few things and I think Jiraiya going to run away if I get him to babysit again." She said with a grin.

Jiraiya paled at hearing about babysitting. "I need a break as well." He said as he summoned a toad and jumped on it. "I'm going to take a break, but I will meet everyone at the tower to let you know how far she has progressed." He said as they both vanished.

Naruto sighed as she shook her head at his antics. "He was a great help during our time away. He even stopped a lot of his research for awhile and stayed with me every night when I was needing at the end of her pregnancy and for the first year and half after they where born." Said Naruto.

This shocked everyone for this wasn't the Jiraiya they knew. This even shocked Tsunade the most. For she figured he would leave Ma with the girl all the time or some random woman to help her.

Tsunade stood up. "Alright. Naruto, Shikamaru you two to my office and the others. Don't you have some work you need to be doing?" She asked the others as they paled and ran away from the boss Lady who could make their lives even more hell.

Hokage Tower

Naruto and Shikamaru walked hand and hand though the village as she looked around it. "Not much has changed since I have been gone." She told him.

He looked over at her with lazy eyes. "Well a few things have changed." He said as he smirked.

"Well I did see they added Baa-chan's face to the mountain and I can see a new stadium." Said Naruto as she looked up at Shikamaru making eye contact with him with a soft blush on her cheeks.

"Have I ever told you that you are beautiful when you blush?" Asked Shikamaru as he leaned into her and kissed her on her lips.

Blushing brighter Naruto kissed him back smiling even more. "You have once before. I believe that is why we have three little kids." She teased him.

This made him pale and blush as he stepped back and wrapped his arm around her. "Well I wouldn't mind a big family." He said with a smile.

Naruto blushed at his comment. "Well I do want a big family as well. But there is something we need to talk about with Baa-chan and it is very important for our kids are going to be need to be protected from a lot that is going to happen." She said with a sad expression on her face.

"Your new family will go to war to protect our children." Said Shikamaru as he pulled her into a hug as they stopped outside of the tower. "Nothing will ever get past us. My father and I have been training and becoming stronger since I have found out I became a father. Even my mom has taken up training once more. She is Jonin level. When she retired, she was Chunin." He told her.

"Really?" Asked Naruto shocked.

"Yes, really. They want to be strong to help you with your dream and goals." Said Shikamaru.

Naruto looked up at him with tears in her eyes. "Real-really?" She asked all choked up.

"Yes, really. I would do anything for you and our family." Said Shikamaru.

They had entered the tower and the Chunins working the tower watched the young couple as they had their tender moment. Unknown to them their friends and Sensei's had been fallowing them and watching them as well.

Shikamaru pulled her into another hug and as she looked up at him. He claimed her lips and kissed her softly on her lips. They stood there for a while in their own little world. Slowly they broke appear and Naruto blushed.

"I love you Shika." Said Naruto.

He smiled looking at her. "I love you Naru."

"Aww… That is so sweet." Said Ino as she Hinata, Sakura and TenTen watched on.

"Come on let's get a move on. Lady Tsunade is waiting for us and I don't want to piss her off." Said Shikamaru as he took her hand and they both went up the stairs up to The Hokage's office.

Tsunade looked at the files before her as Jiraiya sat at the window looking out at the village. "Those two-look good together. We are going to have to do everything we can to keep Naruto and the triplets safe." He told Tsunade with a sad look in his eyes.

"I know. Those bastards are going to be coming for her sooner or later." Said Tsunade as she frowned. "I'm just glad she is back in the village and they are all safe. But I want to know something though." She said looking at the Toad Sage.

"What's that?" Asked Jiraiya.

"When did Naruto take the Chunin Exam?" Asked Tsunade.

Jiraiya smirked looking at his old teammate. "She is really a Jonin but just wears the Chunin vest the Raikage gave her." He told her.

Tsunade jaw dropped open. "When did she meet the Raikage?" She question never knowing of this. "That bastard never told me." She growled out.

Jiraiya laughed. "Well that was Naruto's doing. She doesn't want anyone knowing what level she is at and she is wearing my old Chunin vest for she will begin wearing the one A gave her once she tells you."

"So how did this happen?" Asked Tsunade as her office door open.

"Easy. I killed Hidan and Kakuzu." Said Naruto as she walked in with Shikamaru as he looked down at the blonde next to him.

"How did you kill the Zombie twins?" Asked Tsunade as she looked at the girl with shock written all over her face.

Jiraiya laughed. "With her mother's seals and chains and her father's flying god and something no one has never seen in a very long ass time." He told her with a smirk.

"Yeah that is something I wanted to talk to you about for I need your grandfather's scrolls on it." Said Naruto as Tsunade looked at her puzzled.

Naruto smirked and channeled chakra to her feet as a tree began to grow at her feet and Tsunade looked like she almost had a heart attack. "How?" She asked slowly standing up.

She smiled looking up at Tsunade shyly. "Well one of my parents has Senju blood and I wanted to know if you could do some blood work and we can find out which one." She said looking down at her feet.

"Oh, dear Kami we have to keep this from the council for they will go nuts and I don't want them trying to sell you out or trying to kidnap any of the babies." Said Tsunade.

Shikamaru and Naruto both paled looking at her. "I will kill anyone who ever tries to take my children." Said Shikamaru as a dark Aura appeared around him.

Tsunade and Jiraiya looked at each other and nodded. "This will be done as Naruto asked and I will get the scrolls and taken to you in a sealed scroll so no one will know what is in there." Said Tsunade as she nodded.

"So, Ero-sannin told you I got a field promotion from Raikage for saving his ninja and killing the Zombie twins. But we still have Itachi Uchiha, Kisame Hoshigaki, "Pain", Sasori of the Red Sand, Deidara, Konan, Tobi, and Zetsu. Those who we have left to deal with. But Pain and Tobi are the two most powerful of the group." Said Naruto as she pulled out a scroll and walked up to Tsunade's desk handing it over.

"How did you get all this information?" Question Tsunade as Jiraiya even looked confused.

Naruto smirked at them. The last time I dealt with Itachi I put a shadow clone on him that I over charged and turned into something that he wouldn't notice it." She told him.

"So, you sent in a spy on the boy and got all the information we would need on them?" Asked Jiraiya.

"Yeah. But the one thing troubling me is that Pain keeps calling Tobi guy Madara. But I don't think it's the real Madara but someone faking. But they do have ties to the village and ties to my father's old team." Said Naruto as she looked serious.

"There all dead. Well all dead but for Kakashi." Said Jiraiya confused.

"Yeah, but even you thought the three kids you helped in the rain are dead. But two are alive and using the third one as a puppet with his other 5 other faces of Pein." Said Naruto as she looked at him annoyed.

Jiraiya looked away not having a comeback on that.

"I told you that they would bite you in the ass somehow." Said Tsunade as she looked a little upset.

"Don't blame him. Danzo was the one that lead to them becoming dark and killing Hanzo of the Salamander. For they where growing in power and Danzo had dirt on Hanzo and used it against him to kill the three teenagers. But that blow up in his face for the one with the orange hair used his funny eyes to kill him and his man and take over Ame." Said Naruto as she sighed. "We need to do something about Danzo for he will be gunning for my children soon."

"You have found out a lot of information and it looks like the old Warhawk is still making trouble." Said Jiraiya.

"Yeah. Also, he still has his ROOT up and running for I saw one outside of the Hidden Cloud after I killed the Zombie twins. So that old bastard knows of my hidden bloodline and I know he will try to move for me to become breeding stock. So, I am going to need several clans backing me to protect me." Said Naruto as she looked at Shikamaru.

"You have my Clan as well as Ino's and Choji's Clans. I'm sure we can get Asuma-sensei and Hinata's clan to back you." Said Shikamaru and he tighten his grip on her hand.

"Thank you. It means a lot to me." Said Naruto.

"You also have the Fire Lord and Cloud Lord and Wind Lord backing you." Said Jiraiya as he smirked. "You can thank the Raikage and Kazekage for them to back you and the Fire lord is a cousin to the Uzumaki Clan and once he found out you are Kushina's daughter he will move Heaven and Hell for you." He told her.

Naruto nodded her head to this. "I will need the three Lords backing to protect my children from Danzo and the Civilian Council. For they don't have any love for me. I am a weapon to him and a demon to them." She said as she looked up at Shikamaru.

"I know your secret. I figured it out along time ago." Said Shikamaru as she smirked as he saw all their shock. "What it isn't hard to figure it out and she was born that night when it happen. Also, she is a female version on the 4th. I am not sure how no one hasn't figured it out is beyond me." He said while shaking his head with a sigh.

"Your too damn smart for your own good." Said Naruto as she bumped her shoulder into his side.

He smirked at her. "Well I have to be. For the woman I love is a troublesome woman." He said.

"HEY!" Yelled Naruto as she poof her cheeks out.

Everyone laughed at her.

"So, I was planned on testing your skills. But now that you are able to use that bloodline. I have to push it off for a while for I want you to train with it and become stronger and also, I don't want something going wrong and you hurting yourself or someone else." Said Tsunade.

"That's fine with me. I was going to ask for some time off for a little while for I need to settle in as well as take over as Clan head for the Uzumaki Clan. I'm not too sure if I want to do anything with the Namikaze clan or what. I know I have three children to carry each name. But if I also have Senju that changes everything." Said Naruto as she looks at Tsunade.

"Well brat it is up to you if you want to carry on the Namikaze name. I am not going to push you whatsoever. For Kushina was more famous and it was the Uzumaki family that helped my family and Uchiha to build this village." Said Tsunade as she smiled.

"I know I found several scrolls in Whirlpool for my mom was the daughter of the Whirlpool's Lords daughter and Uzukage's daughter. So that makes mom a Princess and if the Fire Lord is a cousin of my family then carrying on the Uzumaki clan name is more important then any others. Well besides their fathers." Said Naruto as she smiled at Shikamaru.

He smiled back at her and shook his head. "They will carry both our names. But one will become Clan head one day of the Nara as one will become the head of the Uzumaki and if you have Senju. You have it covered with our first born."

Naruto laughed. "Yeah your right a child to be an heir for each family." She said.

"We need to show you the Uzumaki Clan Estate and then get you and the kids settled in." Said Tsunade.

"Well I think tonight the kids can stay with their grandparents tonight and I can stay with Shika as well and worry about shopping in the morning. I am tried." Said Naruto as she was very tried and yawned.

Tsunade stood up. "Let's get going. So, you can go get some rest and get the little ones feed and to bed." She told the girl.

"I'll help you with everything once we get home." Said Shikamaru.

"Thank you. Come on I'm starving and if I'm starving the kids are driving your parents nuts." Said Naruto as she smiled.

Jiraiya paled at this. "Let's move it. For they are worst then Naruto when she is hungry." He told everyone.

They left the tower and made their way over to where the Nara area is at in the village near the deep forest. It took them about 20 minutes to find the old Estate and it had huge stone and iron walls with iron gates and vines with wildflowers over the iron parts of the stone walls.

"Well brat the seal lock is keyed to your blood." Said Tsunade as she nods her head and bites her thumb and swipes her blood across the seal as they see it glow and burn away as the gate slowly opens and a new seal appears again on the gate lock.

Naruto looked at the large house and saw a green house behind the house with a training ground and several other buildings. "I am going to be busy tomorrow looking this place over." She said as she looked at the others. "But I think I need to get back to my kids. For its getting late and I haven't been away from them this long and it feels weird."

"Yeah. Its alright. There is a new blood seal on the gate." Said Jiraiya as he saw the worry on the girls face.

"Its fine. I'll meet with you tomorrow and we can go over the scrolls and other things." Said Tsunade as she smiled softly. "Also have a shopping list ready for I will have a team get everything you will need to buy for you, so you don't have worry about shopping with the kits."

Naruto looked at Shikamaru. "Come on I miss our babies." Said Naruto.

"Come on. Let's get home for I want to get to know my sons and daughter." Said Shikamaru as he wrapped his arm over her shoulder as they walked out of the Estate grounds and walked though the forest leading to the Nara Estate.

After walking for another 20 minutes they could see Shikamaru's house and could hear kids laughter coming from inside. As they walked inside the house the kids ran around the living room as Yoshino and Shikaku chased after them covered in food.

"Shikari! Ryuu! Ryoko!" Said Naruto firmly as they stood and turned to face their mother and lined up.

"Momma!" They said as one.

"I am sorry for the mess they made. I will clean it up." Said Naruto as she made four shadow clones as she and two of her clones take one child and the other two go and clean up the mess they had made. "Shikamaru I need to give them a bath could you show me the bathroom?" She asked him.

"Yeah. I'll have you get them ready for bed." HE told her as they walked up the stairs and go guest room next to his bedroom and his mother had set up for the kids earlier.

Yoshino looked at Shikaku and smirked. "She will make a strong Clan mother." She told her husband.

"She will be a Clan head and Clan Mother." Said Shikaku as he smiled at his wife as he knew the girl was bring back the Uzumaki clan and with Ryuu the boy looked like Kushina and they all have their mother's wife spirit and the Nara smarts. There was nothing lazy about them. So, they would be every deadly when they become Shinobi for while the kids ran away from them, they ran up the walls using their chakra already at only 2 ½ years old. With an Uzumaki chakra.

I'm ending the chapter here. I figure this will set up for the next one to come.