After her defeat on Aether, Dark Samus's remains were picked up by the Space Pirate battleship Colossus, which had been retrieving the remainder of the Phazon on the planet Aether. Dark Samus was able to regain her form using energy from Phazon stored on board. Once she regained her form, she proceeded to kill a third of the Space Pirates on the ship. Dark Samus then brainwashed the remainder of the Pirates into following her.

After subduing the Space Pirates, Dark Samus left them adrift and ventured off alone to the planet Phaaze, the source of all Phazon. She returned to her followers atop a Leviathan, a destructive seed of Phaaze, ordering the Space Pirates to follow her back through a wormhole to her homeworld, and those who refused were slaughtered.

In Skyworld, Pit and Palutena, the duo of married nudists, were kissing and fondling each other when they were alerted of multiple murders in space by a pair of Centurions, "Guys, we have a problem!"

Pit asked, "What's going on?"

"Come see!"

Through a magical pool, the naked boy and woman saw Dark Samus invading the G.F.S. Valhalla to acquire an Aurora Unit with which she might better control her living planet. Appalled, Palutena declared, "We can't just let this happen! We need to take action!"

Then Pit asked her, "What action, Lady Palutena?"

"We'll bring her to us."

Before Dark Samus could take the stolen Aurora Unit to Phaaze, she abruptly vanished from the space vessel. The being made of Phazon was warped to Palutena's Temple, where she stood before the naked angel and goddess as the latter froze Dark Samus in a block of ice, trapping every part of her body except for her head and incapacitating her. While the dark creature tried to escape, Palutena slammed her staff on the floor and shouted to get her attention, "Dark Samus, I think you know why I brought you here."

However, Dark Samus just kept bobbing her head since the rest of her was stuck. Pit answered, "Lady Palutena, I don't think Dark Samus can speak, can she?"

Palutena addressed his concern, "I wasn't asking for an answer from her."

She then stated to the evil being, "It's time to make you pay for your wrongdoings."

"What should we do, Lady Palutena?"

"I was thinking we'd do something like this..."

What Palutena intended to do was "curse" Dark Samus by using her magic. A pillar of light shone on Dark Samus like a spotlight, it was so bright and hot that it melted the ice encased her, but also melted away every last piece of her body armor. The goddess finally told her angel, "... we're turning her into a human. One with no powers."

All the parts of Dark Samus's power suit continued to melt, revealing skin underneath. In fact, one could say that Dark Samus never wore any clothes since being made of Phazon meant that the extremely radioactive and dangerous organic substance was all that could be found underneath her dark blue armor. Her feet, her legs, her crotch, her hands, her arms, her back, her chest, her stomach, and her head were all fully bared. By the time all the armor was gone, Dark Samus had now became physically identical to Samus, except her hair was light blue. Now human, she was genuinely confused about pretty much everything. She really didn't remember what she did or know where she was, like she had amnesia or something as she rubbed her head and groaned, "Ohhh, where am I?"

Pit and Palutena had intended to punish the villain... but seeing Dark Samus look and feel like she had lost her memory caused them to look a little worried and think they may have gone a little overboard.

A human Dark Samus looked at the nudies and asked, "Who are you?"

Looking down at her new human body, Dark Samus now found out that she was completely naked, just like the angel and goddess standing in front of her. She gasped, "EEK! Where are my clothes?"

Dark Samus covered her breasts and vagina with her hands and arms. That made Pit and Palutena look at each other with a little sympathy before looking at the nude woman, they introduced themselves with the nude boy going first "I'm Pit."

Then the nude woman with green hair said to the one with light-blue hair, "And I'm Palutena."

Timidly, Dark Samus giggled, "Hi."

"No need to feel embarrassed, we're both naked, so you're not alone. It's ok."

"Are you sure?"

"Yes, you don't have to be self-conscious. We're not ashamed of being naked since we're nudists, so why don't you uncover your naturalness, and we'll tell you what happened."

"... ok."

Dark Samus moved her hands and arms to reveal her bare body for Pit and Palutena. The goddess explained, "It's kind of a long story, and it may be hard to believe..."

Being guided to the magic pool, the naked angel and goddess showed Dark Samus her dark origin. After Samus Aran defeated Metroid Prime in Tallon IV's Impact Crater, the creature reached out for Samus in its dying moments and grabbed hold. After a brief struggle, Samus escaped, but it had ripped off her Phazon Suit in the process. Samus escaped the scene of the final battle and left it to die in a collapsing cave while escaping to her Gunship. However, Metroid Prime was not finished; it combined elements from itself, Samus, and the Phazon Suit and was reborn as a completely new entity, known as Dark Samus, who then made her way to Aether somehow, most likely by stowing away on a Space Pirate ship.

Dark Samus landed on Aether an unknown amount of time before Samus arrived in search of lost Federation soldiers. The Space Pirates mistook Dark Samus for Samus Aran but were confounded by her aberrant behavior; instead of destroying the Pirates, she consumed their Phazon, only killing those that attempted to stop her from doing so. Her irrepressible infiltration and repeated raids cost the Pirates much in the way of Phazon, and she even crippled their stealth field generator on at least one occasion, leaving them especially vulnerable to Federation attack. It was only after Samus Aran made planetfall on Aether that the Pirates realized they were dealing with a second Hunter and considered trying to forge an alliance with Dark Samus in an effort to repel Samus's assaults.

Samus first encountered Dark Samus inside an abandoned Galactic Federation base set up by the GFMC Task Force Herakles on Aether. Samus followed Dark Samus through a Dark Portal leading to Dark Aether and found her absorbing Phazon on the other side of the portal. Dark Samus destroyed a Light Crystal that Samus was near to, allowing a group of Warrior Ing to swarm in and steal most of Samus's equipment. Samus narrowly manages to escape from the Ing before Dark Aether's atmosphere caused any severe damage to her.

Later, Samus briefly encountered Dark Samus in a Space Pirate facility in the Agon Wastes. Dark Samus shut off the most direct route through the facility, forcing Samus to take a different route. Shortly thereafter, Samus found Dark Samus in the Main Reactor, absorbing more Phazon once again, and engaged her in battle. Dark Samus used many variations of Samus's weaponry, but Samus defeated her counterpart. However, contrary to appearances, Dark Samus was not destroyed entirely.

Samus came across Dark Samus again in the Training Chamber of Torvus Bog. Dark Samus reformed, laughed, and then dissipated without attempting to intimidate or attack Samus. Her intentions during this encounter were unclear, and Dark Samus did not show herself to Samus again until she travels to Sanctuary Fortress.

When Samus arrived at the Sanctuary Entrance on her way out, Dark Samus again confronted Samus. Dark Samus destroyed the bridge structure there in an attempt to prevent Samus from using it to access the elevator leading from Sanctuary to the Temple Grounds. Despite the bridge being destroyed, Samus was able to use her recently recovered Spider Ball to cross the newly formed gap. They encountered one another again in the Sanctuary; on that occasion, Samus found Dark Samus obliterating three Dark Pirate Troopers attempting to force her to take a detour to access the Phazon. Samus followed after Dark Samus. They engaged in combat again in the nearby Aerie Access elevator, which Dark Samus activated, and the battle continued into the Aerie Transport Station chamber. Though Dark Samus demonstrated several new techniques, including a powerful variant of the Charge Beam, an augmented Boost system, and the ability to render herself invisible to the normal light spectrum, Samus was able to defeat her again. Dark Samus then staggered and fell off of the edge of the fortress, though data indicated that she would be able to reform herself after sustaining any damage short of total atomic disruption.

Not long after Samus eliminated the Emperor Ing and acquired the Light of Aether from Dark Aether's final Energy Controller, the planet became unstable. While Samus attempted to escape Dark Aether, Dark Samus blocked her path with a wall of Phazon in an attempt to impede Samus's escape. By that time, Dark Samus had absorbed excessive amounts of Phazon into her system, rendering her unstable without venting excess Phazon energy. After Samus dealed adequate damage to her, Dark Samus temporarily became a being of pure Phazon energy and created a shield impervious to all weaponry, save for blasts of Phazon. By using her Charge Beam, Samus drew in expelled Phazon, then fired it back at Dark Samus. After several blasts, Dark Samus disintegrated.

After Samus successfully completed her mission on Aether and departed, a cloud of Phazon in space above the planet coalesced and formed a new body for Dark Samus. It seemed that she was unable to maintain that form, as she was later collected by Space Pirates in the form of raw Phazon.

Palutena finished the backstory explanation with, "... then Pit and I were alerted about your recent atrocities, and we brought you to our temple so we could turn you into a human to teach you a lesson."

Having absorbed every last detail about her past, Dark Samus put a hand to her face, as if to say, "Whoa. This is heavy. I really performed all those malevolent crimes?"

"Yes, and you really don't remember any of it?"

"Honestly, no. Not at all but seeing myself in a dark blue power suit doing all of that just makes me feel terrible."

"Well, do you like your new body?"

"Yes."

"Good. We're glad you don't want to go back your old ways."

"I just can't believe this is what I've done before my transformation."

The goddess assured the formerly corrupted female, "Well, that was then, this is now."

Pit then asked Dark Samus, "Now, you're a new woman that can change her future, a nude woman with lovely light-blue hair and a body that's about as attractive as the regular Samus's body."

Dark Samus was flattered and giggled, "Thanks."

"Any thoughts on how you want to test out your human bod?"

"Hmm. Since I'm naked as the day I was reborn in a place that's pretty much a nudist colony, maybe we can make out?"

Smiling, Palutena encouraged her angel, "Go for it, Pit. I'm sure she'd love to play with that cute little pee-pee."

Blushing, Pit grinned at Dark Samus, "It's only two inches, one when flaccid."

That made Dark Samus's eyes widen, "Yeesh. Really?"

"Yeah, Lady Palutena thinks small things are cute."

"Hee hee. To be honest, so do I."

When Dark Samus lied on the floor, Pit followed suit so she could snuggle up against his side and rest her head on his shoulder. Nearby, Palutena sat on her butt and masturbated as she watched.

Suddenly, Pit felt the small flames began to lick the insides of him, waking his entire body. Feeling a bit mischievous, Dark Samus slowly brought her mouth to his neck. Breathing over his skin, she felt the shiver run down his spine, but then she nibbled his skin once, before letting her tongue run over the area. He pulled her closer against his body, and she stifled a giggle.

Carefully, a naked Dark Samus lifted her leg and placed it over Pit's hips, stretching to reach his ear, breathing against him before nibbling and flicking her tongue over his ear. Pit put his free hand over her thigh as he gave a low gasp, his fingers digging into her flesh. Sliding over him, she made sure she did not move her mouth away from his ear as she straddled him while pushing herself down against him and slowly grind. His hands crept over her back, holding her in place, but at the same time egging her on.

Turned on, the brown-haired boy moaned, "What are you doing to me?"

The light-blue-haired woman answered, "Making you feel good. It's the least I can do after turned me good."

Dark Samus kissed her way down Pit's throat, nibbling every now and then. She scraped her teeth against his collarbone and nipples, even flicking her tongue over one, she was rewarded with a low growl. His fingers grazed her hips as he pushed her down even harder, thrusting upwards, and she moaned against him, lightly clamping down her teeth around his nipple, tugging softly.

A naked Pit arched his back against Dark Samus, gasping while his fingers slipped off of her. Taking a chance, she began to kiss and nibble her way down his stomach, until she reached his belly button. When she poked it, he raised his hips, causing her to be fascinated by his penis twitched. Lightly, she grazed him down the sides of his thigh, and was rewarded with a gasp and a twitch. Smirking, she leaned forwards, giving a long lick over his entire length. He sighed, murmured, and fisted his hand in her hair to hold on.

Wrapping her hand loosely around Pit, Dark Samus began to tease his frenulum before taking the tip into her mouth and swirling around it with her tongue. She tasted the salty seed leaking from him. Pit's abs tensed and he took a sharp intake of breath as Dark Samus's mouth went from the tip down to his root and back, slowly working up the speed. His breathing now came in small huffs, and his entire body was tense like a bowstring. The bare woman smiled the nude boy, enjoying the way he reacted to her as he said, "Ah, shit, you're a natural."

After a while of Pit's manhood slipping in and out of Dark Samus's bobbing mouth, she stopped her blowjob to crawl over him. In response, he took a hold of her waist and helped her up until she was sitting across his chest. Then he slipped his hands under her thighs, pushing her up as he slid himself further down. It caused her to yelp and fall forwards on her hands, Palutena asked out of concern, "Are you ok?"

The other woman said, "Yeah, I'm fine."

Palutena kept fingering herself while balancing with one hand. Meanwhile, Pit's tongue slid over Dark Samus's slit, before flicking over her clit. Dark Samus was moaning as Pit began to torture her sweetly, she took a hold of his brown hair, making sure not to crush his face by pushing herself down onto him. She had never realized how hard it was to keep herself in control like this, and now all she wanted to do was sit down harder and ride his tongue until she came, she suddenly felt a new appreciation for his efforts.

Gasping as Pit sucked, nibbled, and licked, Dark Samus felt her legs tense as he brought her closer and closer to the edge, but it was not enough as she mumbled with trembling legs, "I can't cum like this."

With one last, long lick, Pit lifted Dark Samus up slightly and slid out from beneath her. He took a hold of her from behind and positioned her on her hands and knees before he got between her legs and asked her to wiggle her bum a little. When she did, he gave her a light spank before massage her behind a little. Given the way Pit's hands were groping Dark Samus's buttocks, she could have sworn that she felt her own wetness leak out of her vagina and drip down over her pubic bone and stomach.

Pit used the tip of his cock to tease Dark Samus, "Do you think you can cum like this?"

"Stick your dick in me, and there's a strong chance I will."

Carefully slow, the tip of Pit's small penis was put in Dark's Samus vagina, she moaned at the wonderful feeling of him stretching her as much as he could, with just a pinprick of pain from how tight she was. He soothed, "Relax. The world's cutest naked boy will make you climax."

Rubbing her lower back with a hand, he slowly sunk into her, relaxing her as her orgasm once more began to build, but she wanted more. Needed more. Once he fully eased himself inside, they both groaned at the feeling of his sex organ buried completely inside of her cavern. Holding still for a moment, Pit let Dark Samus get used to him before he slowly slid himself out, then pushed inside of her a bit harder.

Apparently satisfied with her reaction of pleasure and not pain, he began to slowly thrust into her, working up the speed as his fingers dug into the flesh over her hips, holding her firmly in place. He released her with one hand and gave your behind a little slap that subtly vibrated inside of her, making her stiff nipples even tighter.

Reaching across and under Dark Samus, Pit gripped one of her breasts to send an excited shiver through her. Without even thinking about it, her hand slid down her body until she began to rub her clitoris, heightening the pleasure even more as he kept pounding into her. This doggy-style position was amazing, as it allowed him to hit the front of your vaginal wall in just the right spot, and he knew that it would be a great orgasm. Her muscles tensed around him as the pleasure built inside of her, and it made her feel him even better as he giggled, "Jeez, you're clenching hard, Dark Samus!"

"It just feels so good, Pit."

"I'm glad you like it."

A shiver went down Dark Samus's spine and straight to her core, and she gave a whine as the pleasure became almost unbearable. She wanted, no, needed, to cum, and she needed to cum now. Good thing it wasn't much longer because something snapped inside of her, and she let out a groan as her head lolled back with her eyes rolling into her head. Her whole body began to shake as her muscles rhythmically clenching around Pit, who was still thrusting into her over and over again, egging her on until everything turned black for a moment.

Gasping as her senses returned, Dark Samus writhed in Pit's grip as he increased his speed to a desperate rhythm, his moans were loud and were music to her ears. She knew it was her clenching around him that had triggered his own need to orgasm. That knowledge felt pretty good, which was probably one of the reasons she felt a pressure build inside of her again.

One perfect thrust from Pit completely threw Dark Samus off of the edge and sent a gush of wetness pouring down your legs as she struggled to breathe. By surprise, Palutena was behind him, pinching Pit's buttocks. His own body began to convulse with help from his goddess, and Dark Samus felt him pulsate inside of her, filling her up.

Dark Samus's legs gave out, and she slipped out of Pit to collapse on the floor. Panting and gasping, she felt his seed beginning to trickle out of her, mixing with her own fluids. Heavily, she breathed, "I'm not sure I can stand."

Pit gave an exhausted laugh, then yelped when Palutena squeezed his bare bottom as she came from masturbation. Her cum sprayed between her legs, some getting on Pit's feet.

By now, Pit was also unable to stand, so he lied down. He and the ladies felt like their legs were so weak they might have snapped if they even tried to get up. They were spent and euphoric, so it did not matter to them. Dark Samus smiled, "Pit, Palutena, thanks for the transformation. After what happened and after seeing what I was like before being human, I think it's safe to say that it's more of a reward than a punishment."

Palutena smiled, "You're welcome."

All three of them were soaked in clammy sweat as they kissed each other's lips and cheeks, but none of them cared as they fell deeply asleep.

By the end of the week, Dark Samus was no longer evil. She became an outgoing and friendly hero. Her former archenemy, Samus, was actually amazed at how Pit and Palutena helped her bad copy turn good as the blonde met the other version of her. Samus looked at the woman who now wore a yellow Zero Suit with her light-blue hair to look like a reverse coloration of Zero Suit Samus.

They shared a heartfelt embrace as Samus asked, "How did you change?"

Dark Samus answered, "A naked duo consisting of an angel with spiky brown hair and a goddess with absurdly long green hair helped me. Their light melted away the darkness within me."

Samus looked at the bare boy and woman and said, "Thank you."

Neither Pit nor Palutena said anything other than, "No need to thank us, your stunned happiness is thanks enough."

As the two Samuses exited Palutena's Temple together, the one who was formerly Dark Samus chose a new name for herself, Sierra.

Sometimes, what a villain really needed was a new lease on life, to be given a chance to start anew and make better choices in life. Pit and Palutena proudly watched on through their magic pool, looking at Samus and Sierra working together, amazed at how they unexpectedly purified a corrupted soul.

THE END