Sombra smirked as Ritsuko's jaw dropped as reports of all the ships in the harbor where floating In the air as Shinji's horn glow, "Look at him troll this nag who won't accept magic like a true umbra!" he said almost proud.

Twilight's ghostly form was next to him and he said, "He's not an umbra he's an alicorn! A noble pure soul!" she said almost angry and poking at Sombra with her left front hoof.

The former king smirked as he trotted around the princess of friendship, "In case you haven't notice thanks to you messing with my spell he is both! Remade in a combination of our images an Umbra Alicorn! A noble prince of destruction! A true paradoxical being!"

Twilight rolled her eyes and stomped the ground as she said, "you make it sound like he's our son!" she said before hummed thinking about her words.

Sombra raised an eye brow and smirked happily as he said, "How isn't he our son?" Twilight jumped at the question as Sombra said, "Is he not made in our image? Is it not our power that flows through him? Is it not us who comforted him when he was depressed and helped him pick himself up and stand on his legs with new strength and a goal in mind? And that may have been one art but seeing as Gendo and Yui through him away we are already more parents to him then they will ever be! The way I see it my dear we may not have given him life but life gave us him! Live gave us a son together!"

Twilight muttered trying to find a fault in her logic only looking to Shinji who was flapping his wings to fly around the room making Ritsuko bang her head into the walls as she just said the wings had to be for show and she blinked and let out a stunned, ".. I have a son with King sombra!... I … have…a …Son!" she seemed stunned and at a lost.

Sombra smiled as he moved closer to her, " yes We have a son together I guess we'll have to be wed as soon as we are solid again to avoid a scandal! Life giving me a child with the only pony to defeat me! With a mare who's smarts and strength make her beauty only icing on the cake! " he then held her chin with a hoof making Twilight blush.

Twilight muttered as she repeated, "I have a son with King Sombra!" to herself before Sombra kissed her forehead making her wings flare out as he chuckled and trotted off saying, "Now with that in mind! I have new plans and goals to chase! Goals that will allow us to be a family together! Do so watch our boy while I'm away dear!" he then vanished by turning into unseen mist.

Shinji was trotting out smirking proudly as he looked back to Ritsuko being on the ground crying " manipulation of clouds flying, the gear couldn't even pick up the strange energy being used to move objects around! There has to be a logical answer to it all but I just can't find it! THERE HAS TO BE A LOGCIAL AN ANSWER!"

Shinji smirked and proudly said, "Magic!" Ritsuko was about to scream about there being no magic and Shinji flared his wings making his eye turned dark magic again as he said, "I am a talking winged unicorn, and we battle and study monsters known as angels with giant organic tech mechs that mimic there powers, your argument is invalid!" He then turned into black mist and went into a vent making Ritsuko faint at the sight of it!

A moment later Nerv staff were jumping as Black mist came form a vent and turned into Shinji who cracked his neck before moving on as he looked at the shocked people, "What never seen a pony before?" he said sarcasm and a hint of rage filling his voice.

The umbra Alicorn smirked as he trotted past Gendo's office his ears over hearing him stating, "This isn't in the scenario." He rolled his eyes and yelled to the door, "WHAT ISN'T IN THE SCENARIO OLD MAN!?" The sound of Gendo screaming made shinji laugh his flank off as he rolled around on the ground laughing.

Elsewhere.

Misato was at a bar drinking when Kaji came up to her and said, "Hay I heard the good news about Shinji being back!"

The Women put her hand out and said, "Not in the mood Kaji!"

This socked the Inspector as he blinked and said, "Oh something most have happened to him on his return then is he ok?"

Misato got up and said, "That depends what you mean by ok!" she said sadly as she left and walked by an ally.

Kaji then got close and not taking the hint asked, "So let's go visit the little guy I'm sure he'll be happy to see you!" he said still not taking a hint Misato growled and was about to hit him but a black mist cover Kaji then when it left he was knocked out.

Misaot's eyes widen as the mist took on a semi solid unicorn like state with red glowing eyes and what looked like a cape made of the mist it was made of and the Voice of King sombra said, "was he bothering you Ms.?"

Misato's eyes widen as she shock and pulled out her gun and said, "What are you!?"

Sombra smirked as he said, "I was known as king Sombra! I take it my true form is scary by your standards as well as my worlds standards!"

Misato's eyes widen as Sombra said, "I can tell you what happened to my dear Son Shinji if you follow me!"

the Major Blinked as she lowered her gun and said, "But Shinji is Gendo's son!" she stated as Sombra chuckled.

The former King then said, "and if the one you called Gendo was a real humanbeing you would be right! He is nothing but a puppet made and created for the whole of ending this world and using my Son to trigger the even to end all life! I speak the truth! Follow me and I can show you!"

Misato blinked before she followed the Shadow unicorn into the ally where he vanished leaving behind a scroll that she picked up and read her eyes widening, "No no no!" she said in panic as she looked at the scroll to see a title "The dead sea scroll not original copy"

Meanwhile the Seeles where having a meeting.

the Twelve seeles were activated as one said, "A copy of the scrolls has been stolen form under Gendo's nose!"

Two then spoke, "It most be related to what shinji has become! Is he truly is the Ancestral race he would know about them! Be after them!"

Seele three spoke up and said, "Or the scrolls could react to him!"

Seele four then spoke up, "or as things within the scroll are to derailed they may be slowly vanishing as the information within becomes useless!"

Seele five spoke up, "Do you all know what blaspheme you all speak!"

Six then spoke up saying, "It's not Blaspheme if it is true! He has the knowledge of humans and the study of his cells information gotten by studying a hair that fell off shows he has infinite life he has both the powers of the fruit of might and the fruit of knowledge!"

Seven then spoke up, "and power beyond our understanding."

Eight then said, "We most act under the guidelines he has ascended to one of them! And become above us all!"

Nine then spoke up, "I will not believe it till he destroys an angel with out an Eva!"

Ten then said, "then we'll order Gendo to not send out his Eva in the next attack see what his drive to protect does to him.

Eleven then said, "Then if he does we'll accept what has been theorized here as truth!"

Twelve then said, " meeting over!"

Later on in the nerv Base Shinji was in his room's shower growling as he hit his left forehoof against the metal wall, "BASTARD! YOU MADE ME HURT MY FRIEND! YOU WHERE GOING TO MAKE ME KILL MY OWN SISTER! YOU WANT ME TO DESTORY THIS BUCKING WORLD!" he yelled to himself his dark magic eye flaring as he growled showing his fangs as he spoke there was no cameras in here! It was the only place the eyes of Seele was not watching him the only place he was safe to growl and scream about all he want to burn down!

The Good and noble Dark magic prince of Destruction growled as he heard Twilight speaking in a motherly tone on the other side as she said, "I know a spell for healing and regeneration! I know what became of your friend and sister haunts you let me help!" She sound like a mother.

Shinji's eyes cried as he smiled as he happily said, "Thank you!"

Later on in a hospital Shinji appeared through the vents in mist to appear by Toji's bed side as he became solid he sighed and made his horn glow as it made him glow as he said, "here you go buddy!" he smiled.

In a moment the sleeping Toji left leg reappeared as he smiled and trotted out to go to the room next door to his little sister Sakura who was pretty much confirmed to be spending the rest of her life in a wheel chair his horn glow making her glow before he smiled and turned into mist to leave as he said, "It has been undone awaken happily!

the next morning in the Hospital Toji's eyes opened to see his little sister stand as she jumped, "Big brother it's a miracle!" she said happily.

Toji then sat up in shock and looked down to see two legs making Sakura's jaw drop before she ran to happily hug her brother, "Mircales do happen twice!" she said happily as the two siblings cried and hugged.

Meanwhile in the Nerv base.

Shinji opened his door upon hearing a knock and Maya grabbed him and hugged him as she cried and said, "We saw the security tapes you Good little pegacorn!"

Shinji gasped for air before he turned into mist and reformed behind her and trotted along as he said coldly, "I didn't do it to please anyone! I did it because it was the right thing to do and also it's not pegacorn! It's Alicorn! Alicorn!" the tone in his voice made Maya jump in shock as she said, "What the hell is happing!"

Meanwhile

Twilight was running a scan on Lilith as she hummed, "Strange you be! I wish I could blast you right here and now so you won't be used to hurt by foal! But sadly all I can do is scan and teach for the moment!" she sound angry at the large beast before her that seemed to stare at her.

Twilight looked at it and said, "you can see and hear me well then I'll say this! You are doomed! Your humanity has been corrupted by the want of what the angels have! You are being used in a plan to merge both you humanity, adam and his angels into one being!"

Lilith start to struggle and growl at the words said it was screaming in rage and pain as the nerv stuff around it jumped in fear they couldn't see or hear twilight so to them it appeared like the monster roared to life!

It's roars could be heard all through out Nerv making everyone gasp in fear as Shinji smirked and chuckled as he happily said, "It's the end of the world! At least as we know it! Good riddance! I could count those I would honestly miss on two of your hands and still have some empty spots!" he sound cold shocking everyone.

Rei looked at the umbra Alicorn and blinked before raising her hand, "Aren't unicorns suppose to be happy and cheerful?" she asked in confusing seeming lost.

The former human shirked showing his fangs as he said, "Unicorns don't have bat wings or fangs! I am Umbra Alicorn! Umbra means darkness!" he state happily before turning into Mist and traveling through the vents showing just how impossible it would be to contain or control him and also hammering in the point he is only on this base as he wants to be!

Gendo was watching Shinji on one monitor and the roaring Lilith on another as he said the only thing he could, "this is not in the scenario!"

That is when Misato's voice was heard yelling, "I'M TURNING IN MY TWO WEEK NOTICE! IN TWO WEEKS I WON'T BE WORKING HERE ANYMORE! I WANT TO SAVE HUMANITY NOT TURNING IT INTO TALKING HORSE!"

Gendo's eyes widen as his glass almost fell off as he said, "She is suppose to be blind by her hate!"

Outside Misato flipped her hair as she happily whispered out, "Take that you faker! I'll be back when Shinji's real father takes his rightful place! At least I get to be here for the next angel!" she said with a true smile.

to be continued.