Disclaimer: I don't own Naruto or any of its affinities.

(Author's note: I noticed on one of the reviews that I miss labeled the chapter numbers so I will fix that. I also noticed that the last chapter seems a little confusing. So to try and clear some of the confusion, the scientists were going to use the children for their own purpose. The head scientist was the one that killed the other scientist and not the ANBU members. There are probably more inconsistencies in my stories so hopefully I will find them and correct them as I write on. If any one wants to help me find them, the help is well welcomed.)

Chapter 3

Academy Day

It has been ten years since the attack on the hidden leaf village by the demon Nine-tailed Fox. Since then the villagers of the Leaf Village have rebuilt and returned to there every day lives. During the ten years many things have happened, the attempt on kidnapping the heir to the Huuyga at the age of four, the massacre of all but several Uchiha clan members by the heir and prodigy of the Uchiha clan, and the lose of the prized sword of the Second Lord Hokage. Through those escapades the Village Hidden in the Leafs was still able to retain their status as the strongest of the five most powerful villages.

As for the children, the knowledge of the experiments that was placed on them was kept a secret to all, but the new council and Jounin level ninjas. The lives of Kiba Inuzaka, Shino Aburame, and Sasuke Uchiha were normal as can be. Well Kiba and Shino's were since they didn't have to experience their own clan member, let a lone their own sibling killing most of their clan.

Hidden Leaf Village: Hokage Tower

"It's been ten years Danzo how is Naruto?" asked Sarutobi

"He has progressed well Sarutobi." Exclaimed Danzo "His skills are still lacking in Genjutsu, but his proficiency in Ninjutsu and Taijutsu are adequate. He still needs work on his basics skills. He can do some high rank Justus without trouble, but you know how the basics are the most important skills that a ninja must possess."

"Yes, I understand that Danzo. He will learn the basic skills in the Academy then." Stated Sarutobi "Now on to more pressing matters has he gained any new abilities since our last discussion over Naruto?"

"Indeed he has, one that I think could help him if trained correctly." Stated Danzo

"Oh and what could that be." Asked a curious Sarutobi

"He has now developed the ability to use wood element jutsu, just like the First Lord Hokage." Stated Danzo "On top of that his DNA didn't test out to be the like the First Lord Hokage. It tested out to he his grandson's."

"What do you mean his grandson's? Nawaki's been dead for around thirty years. How would that be possible?" asked a startled Sarutobi.

"My Roots members are still investigating this matter even as we speak. We need your permission to dig up his corps to examine the body." Said Danzo.

"That is something I can not do Danzo. The decree of the Second Lord Hokage strictly forbids anyone, but family from giving access for something like this. And with Tsunade wandering the world we may never find her to ask for permission." Said Sarutobi

"But as the Hokage you should be able to override that order." Stated Danzo

"I would if I could, but as the last wish of the Second Lord Hokage it is one that can not be overturned so easily." Stated Sarutobi.

"Then there is nothing we can do until Lady Tsunade returns from her journey." Stated Danzo.

"So to review, Naruto Uzumaki has obtained the powers of Wood element Justs as a wind affinity ninja, along with sharp sense of smell and is able to communicate with several species of bugs that the Aburame clan is capable of doing. Is their anything else he has obtained?" asked Sarutobi.

"No though from what we have gathered he has gained a memories from several different people all of who are dead." Stated Danzo

"What do you mean he has gained the memories of several dead people?" asked Sarutobi

"During the nights as he slumbers he will talk in his sleep about conversations that were not made in public." Stated Danzo "He talked as if he were Sakumo Hatake, telling Lady Tsunade that he's an adult now and didn't need to be babied."

"This is troubling news indeed. Have you found out how?" asked Sarutobi

"Yes we have they stem from the same thing as earlier. The process was different then the one used by Orochimaru. But the result was the same. I don't know if what will happen but we can only hope for the best. Now if that is all I leave Naruto in your hands Sarutobi so don't screw things up." Said Danzo.

Danzo leaves Sarutobi's office to return to his office. Sarutobi looks at the pile of papers in his in box on his desk and lets out a sigh before deciding to return back to his work.

Hidden Leaf Academy

"Attention!!!" yelled the teacher. We see an average height man wearing a pair of gray pants that are taped down at the ankle, a gray long sleeved shirt and a green vest with several pockets on the front and a red swirl on the back. He has a ponytail that puffs out a little on top and a long scar on the bridge of his knows. "Now everyone before we begin I would like to introduce you all to a new student. He was just given clearance to enter the academy. You can come in now."

"Thank you Umino-sensei. Hello I am Naruto Uzumaki. It is a pleasure to meet you all." Greeted Naruto

"Naruto here has been undergoing a different program for learning ninja techniques and procedures and will be here to learn the basics skills that his other teachers skipped out on." Umino said to the class. "Oh and call me Iruka-sensei Naruto, I'm not that old yet. Now just take what ever available seat there is alright."

Lunch Time

One Group of Students

"Man Iruka-sensei sure likes to talk about all the different rules that ninja should follow." Complained a boy with a gray parka on.

"I know what you mean Kiba I thought I was going to fall asleep after ten minutes into class. I had to keep pinching myself just to stay awake." Said one of the boys in the class.

"Hey Kiba what do you think of the new guy in class?" asked another boy.

"Don't know, but if he's here to relearn the basics of being a ninja then he must really be bad at being a ninja." Stated Kiba "I think its best we ignore him."

Another Group by the Windows

"Hey Shikamaru what do you think of the new guy in class." Asked chubby boy with brown hair wearing a green jacket and black pants as he was eating some chips.

"Don't know never seen him in school before." Said Shikamaru, a skinny boy wearing a mesh shirt and gray jacket, with black pants. "But it's probably to troublesome to take to him, Chouji."

"I guess that's true, well I better finish the lunch my mom packed for me." Said Chouji.

A Group of Girls

"Leave Sasuke alone Billboard-Brow!!!" yelled a platnuim blond girl wearing an orange shirt with a pair of blue pants.

"Not before you Ino-pig." Yelled the girl, who wore a red shirt and dark green pair of pants; she also wore a red ribbon on top of her head.

Ding Ding…

"Good going Billboard-Brow, now I don't have much time to eat my lunch with Sasuke." Complained Ino

"CHAAA!!! Right like Sasuke would eat with you." Said the girl with the ribbon in her hair.

"And you think he would rather eat with you get real." Countered Ino

Ino and the girl with the red ribbon in her hair then looked at each other with hatred in their eyes. You could feel the sparks that the two of them sent at each other. After a minute both girls looked away from each other. They then realized that Sasuke had left. At the realization they started to eat their lunches that their parents made for them in silence.

End of the school day

"Alright class that's enough for today." Said Iruka "Now remember, we will be having a quiz on ninja rules and regulations for Monday, have a good weekend."

After saying that Iruka packed his things up faster then the kids a left the room.

"Sasuke!!!" yelled most of the girls in the class. "Go on a date with me tomorrow."

"Are you straight?" asked a quiet voice from somewhere in the room

"No." said Sasuke before realizing someone asked him the question.

Upon hearing Sasuke's reply to the question, all the guys except Naruto started to laugh and all the girls stared at Sasuke as if he was shot.

"Hey guys did you hear that Sasuke said he's gay." Stated Kiba as he laughed out loud with his friends.

"Maybe we should call him Sasgay instead." Laughed another guy in the class.

"Call me anything other then my name and you are dead. Hear me." Threatened Sasuke

"If you don't mind I would like to leave the building out the door not the window so if you two are done your lovers quarrel then move so some of us that would like to get some combat practice done before the sun sets." Said Naruto in a straightforward manner.

"I am not gay!!!" yelled Sasuke

"What ever your personal life is like is none of my business. So please move." Asked Naruto

"That's it you and me outside right now." Shouted Sasuke

"Very well. Just move so I can." Said Naruto

Outside the academy

Naruto and Sasuke are facing each other getting ready to fight.

"I don't know what kind of training you were given before coming to the academy, but if your sent here to relearn the basics then you must not be good enough to be a ninja." Taunted Sasuke

"Believe what you want it makes no difference, only those that act the loudest are usually the ones to die first." Stated Naruto

Sasuke starts off by throwing four shuriken at Naruto. Naruto pulls out a kunai and deflects the shuriken into the ground and tosses two kunais at Sasuke. Sasuke sees this and dodges to the left. Naruto knowing that Sasuke would dodge to the left intercepts him with a sidekick to the head. Sasuke blocks the attack with his left arm and throws a right hook at Naruto. Naruto back flips away from Sasuke and throws three shuriken in Sasuke's direction. He then dashes forward and punches at Sasuke who shifts his weight to the side to let the punch miss him by a millimeter he then, spins around to Naruto's back and pulls out a kunai to strike him from behind. Naruto acting fast uses the replacement justu to avoid Sasuke's attack. Naruto knowing that he can't use his stronger techniques by order of the Hokage and Danzo, decides to use one of the techniques that he developed on his own that they didn't forbid him from using.

"Ninja Art:" Naruto started to say.

In hearing Naruto calling out a technique got ready to use the replacement technique to avoid the attack.

"Clone Jutsu!!!" Naruto had created five clones of himself.

"Ha!!! If that's all you can do for ninjutsu then you're through." Taunted Sasuke

"Then I hope you like this. Sexy Jutsu!!!" yelled Naruto

What Sasuke thought was an attack was just a transformation technique using illusions, but what he saw made him blush along with all the boys, and some of the teachers. For the rest of the female gender they were very angry with Naruto. Some of the Chunin teachers that were girls were ready to kill Naruto for his jutsu alone. Sasuke's hesitation was just what Naruto wanted. Naruto kicked Sasuke in the chin and sent him to the sky. He then jumped above Sasuke until they were facing each other in mid-air. Naruto then grabbed Sasuke around the legs while holding his arms with his feet and was going to drive Sasuke's head into the ground to finish the fight. Before Sasuke could hit the ground five chunin appeared and stop the movement. Naruto was dragged away from Sasuke. Sasuke who accidentally wet his pants during the attack just left before anyone could tell what he had done.

After being separated from finishing Sasuke in the fight, Naruto was punched by several girls and knocked unconscious by two Chunin level female ninjas as retribution for his juts. When Naruto woke back up several hours later in the schoolyard. He thought what happened. He then remembered his fight with Sasuke and then getting knocked out by some girls. It took him a minute to realize that they were unaffected by his technique

"How can my technique not work on women it works on all ninjas." Thought Naruto

What Naurto didn't realize is that the only time he used his technique was when there were only men around. Seeing as how no one was around Naruto decided to head home and rest completely forgetting his school bag that he left next to the gate.

Next Morning

"Damn where did I put my backpack?" questioned Naruto. He thought for several minute about what he did the other day. He then realized that he had left it by the school's gate when he was about to fight Sasuke. He looked out the window and saw that it was raining and that his bag would be soaking wet then he retrieved it. Naruto decided to take his time since his bag couldn't get any more soaked then it already was.

"Alright class, because of the fight yesterday, we will all be having a pop quiz on all the ninja rules and regulations." Stated Iruka

"Aw man." Whined the class.

Skip two years later

"Alright class since today is the last day your all free to do as you please for today." Said Iruka "Just remember to come here to find out which Genin teams your on and who your Jounin teach will be."

"Yeah!!!" cheered the Class.

"Naruto I would like to have a word with you for a minute outside." Asked Iruka

"Sure thing Iruka-sensei." Replied Naruto

Outside the Classroom

"Naruto I noticed you didn't cheer about having a free day today." Asked Iruka

"Well when I was with "Roots" I never really had any free time so I just don't know what I will be doing until after time that class would have been done at." Said Naruto

"Hmm… well if you want you can help the school organize the old files since their in the archives and since the Nine-tail's attack their still trying to organize it." Said Iruka

"I think that would be fine with me Iruka-sensei." Said Naruto

The Basement of the Leaf Ninja Academy

"Alright here you go Naruto as you can see it's a total mess." Said Iruka

What Iruka and Naruto saw were mountains of files and cabinets that held the name of former ninjas as students of the Leaf Acedamy. Files stacked in every direction. Some opened cabinets with paper jammed in with no filing system at all.

"A mess is an understatement." Said Naruto

"Well good luck just do what you can and tell me what you did before you leave okay." Said Iruka

"Alright Iruka-sensei." Replied Naruto

Five Hours Later

"Alright Iruka-sensei I'm finished." Stated Naruto

"What??? Your done already?" questioned Iruka who know that it would take twenty teachers at least a month to finish what Naruto just did in five hours. "Naruto that's impossible for you to finish it that fast. It takes a month for twenty chunin teachers to finish in five hours."

"Well lucky for me I know different clone techniques so it helped me go through most of them." Replied Naruto "Oh it also helped that I found a few smaller scrolls that gave some powerful jutsus on them down their in that mess."

"OH? What kind of Jutsus?" asked Iruka

"Well there was a scroll that partially explained a technique called Rasengan. It mainly talked about the use of water balloons and rubber balls so I don't really get it. Another technique was Shadow Clone Jutsus, the scroll talked about how to Shadow Clone almost anything. I must say it was amazing." Said Naruto

"Naruto do you have those scrolls with you?" asked Iruka who was rather disturbed that such forbidden techniques were just sitting around a messy archive.

"No I sent then to Third Lord Hokage since I know they are forbidden techniques since the chakra needed is to great for a single child. Then again I'm not your average child." Said Naruto

"What do you mean by that Naruto?" asked Iruka

"It's nothing Iruka-sensei, just talking to my self." Replied Naruto

"Okay well it time for lunch so how about I treat you to some Ramen for working so hard." Asked Iruka

"Alright then just one question what is ramen?" asked Naruto

"Well I'm not to sure how to explain what ramen is exactly. Just ask the cook at Ramen Bar okay." Replied Iruka

Ichiraku Ramen Bar

"Well here it is Ichiraku's home of the best ramen you can find!" exclaimed Iruka

"Looks kind of rundown to me." Said Naruto

"Remember Naruto looks can be deceiving." Stated Iruka

"That's true." Said Naruto "Your always talking about how a ninja must look through deception, but this place looks rundown outside and inside."

"It may look rundown, but trust me the ramen here is the best in the Leaf Village. I should know. On different missions I went to some different Ramen Bars and none of them were as good as Ichiraku's." stated Iruka

"Thanks for the praise Iruka so the usual today?" asked the chef

"Yes, please and my student here would like…" Iruka trailed off on since he didn't know what he wanted.

"I'll have some chicken soup and some nutrition pills." Asked Naruto

Iruka and the chef looked at Naruto funny at his order. Not knowing what to do or say, the chef looked at Iruka for an answer. Iruka having never seen Naruto eat anything at school during lunch just stared at Naruto as if he had just been slapped and called a pervert for no reason.

"Is something wrong with my order?" asked Naruto

"No, Naruto it's just this is a Ramen Bar, he wouldn't have any nutrition pills." Said Iruka as he tried to explain to Naruto who looked at him with a questioning eye.

"But that's the only thing I am allowed to eat." Said Naruto

"Really? Who gave the orders for that." Asked Iruka not liking that someone ordered Naruto to only eat chicken soup and nutrition pills.

"It was Mizuki-sensei, he said only humans are allowed to eat real food. He then gave me some nutrition pills and said to take those only. Though I did disobey orders and took some chicken soup with them." Said Naruto

"Why would he say only human are aloud to eat real food?" asked Iruka

"Said I act to much like an Aburame." Answered Naruto

"I see and how are the Aburame not human? Shino's in your class and he eats normal human food as well." Said Iruka

"I do not know sensei." Stated Naruto

"I'll have to talk to Mizuki about that. A teacher must treat all of his students fairly. And Naruto, you're allowed to do, as you want Naruto just so long as it's not dangerous or disruptive." Said Iruka "By the way what did you eat as you were growing up?"

"I was given mostly rice, a pickle, some beans, a small fish usually fried, and a small orange." Said Naruto

"That's it haven't you eaten anything else?" asked Iruka

"No I haven't are their other types of food then those?" responded Naruto

"Yes there are many types of foods out in the world." Said Iruka "Well for now why don't I order something for you and see how well it taste for you. if that's alright with you."

"That's fine sensei." Said Naruto

After the chef took Iruka and Naruto's order Naruto watched as the chef prepared and made the ramen from scratch.

"So ramen is a soup based food." Said Naruto as he analyzed his ramen.

Naruto looked at all the ingredients used and found that this food was not nutritionally sound from what he was told was a balanced diet.

"This is not a nutritionally balance food." Stated Naruto

In hearing this the chef look at Naruto a little angry at the comment. Iruka not liking were this could lead decided to jump in.

"Naruto not everything you eat has to be nutritionally balanced. Your still a kid right now you can waste time on eating healthy when you're older. Besides after all the trouble that Mr. Ichiraku went through to create his own special stock and being kind enough to let other people have some, you should feel welcome." Said Iruka as he tried to calm down the chef.

"Alright Iruka-sensei." Said Naruto

Naruto then took some of the ramen into his mouth and started to chew on the noodles. He then took some the soup to wash down the noodles. Once he finished that first mouthful his eyes widened at the new sensation he was feeling.

"This extraordinary, I've never tasted anything like this." Said Naruto

"I'm glad you like it kid. Now eat up before it gets cold." Said the chef

Iruka was glad that Naruto was able to try something new since he knew that Naruto always followed orders and procedures as he learned of them.

Genin Assignment Day

"Good Morning" yelled out Iruka as he walked into the door.

"Morning" said some of the sleepy genin.

"Morning sensei" said some of the excited genin

As for the rest they just ignored Iruka.

"Alright listen up I'll only say this once so listen for who your instructors are." Stated Iruka

"Team One: Uba Iche, Cyco Iche, and Crot Iche. Your Jounin instructor is Supi Iche

"What??? Why do we have are Mom as are instructor." Yelled the three triplets.

"Because each of you is only good in one of the three ninja arts." Said Iruka

The rest of the class laughed at their embarrassment.

(Since I don't know any actual Japanese names and the three above are just joke names I created I'll be skipping to the Teams seven eight, nine and ten.)

"Team Seven: Sakura Haruno, Sasuke Uchiha, and Sai who was placed in at the last moment. Your instructor is Kakashi Hatake." Stated Iruka

"Take that Ino-Pig!!! True love wins over all." Yelled Sakura.

"This isn't over yet Billboard-brow." Yelled Ino

"I read that it is custom to give people that we are working with pet names is it not." Asked Sai

"I don't care just don't slow me down loser." Said Sasuke

"Very well Dickless." Said Sai

At hearing his nickname Sasuke gets angry with Sai and throws a punch at Sai. Sai ducks the punch and pushes Sasuke off balance. Sasuke being off balance grabs the closest thing to him, which turned out to be Sakura. Sakura not paying attention falls down on her butt and feels something breathing up her dress. Out of reflects Sakura calls out pervert and smashes her fist into the person that was between her legs. Sasuke is sent flying back from both the punch and from kissing Sakura's crotch. Sakura realizes just who she punched gets up to say she was sorry, only to kick him again when she sees him with a perverted smile and blush on his face.

"Okay now that the entertainment is done. Can I continue." Asked an irritated Iruka

"Sorry sensei." Said Sakura as she was blushing from embarrassment.

"Okay Team Eight: Kiba Inuzaka, Shino Aburame, and Hinata Huuyga. Your instructor will be Kurenai Yuuhi." Stated Iruka

"Alright were on the same team Hinata." Yelled Kiba. Who saw Hinata as one of his closest friends.

"Team Nine: Naruto Uzumaki your instructor is Anko Mitarashi."

"Team Ten: Ino Yamanaka, Shikamaru Nara, and Chouji Akamichi, and Chouji put down the bag of chip until I finish. Your instructor is Asuma Sarutobi." Said Iruka "Your dismissed for lunch then come back hear for your instructor to pick you up."

During Lunch

Each team got together to talk about how they were going to be come great ninjas. All except Naruto and Team Seven.

"I can't believe the nerve of Sai calling me Ugly." Complained Sakura "And calling Sasuke "Dickless" I'll kill him."

"Hey Sakura." Said a blushing Sasuke

"Yes Sasuke? Is their anything I can help you with." Asked Sakura as she blushed at remembering what happened at the assignment.

"I was wondering if you would like to eat lunch with me if your not busy right now." Asked Sasuke

"Are you kidding I love…" Sakura started to say excited at this sudden turn of events. "I mean that would be nice. So were are we going?"

Scene Change

"So how is everything at headquarters Sai?" asked Naruto

"Everything is running fine Uzumaki." Said Sai in a slight anger tone of voice.

"Hey are you still angry with me for letting you sit on that cactus when I was still part of Roots?" asked Naruto

"No I decided to forget that incident when we were younger." Said Sai

"Okay. So what's with that cactus your holding?" asked Naruto

Scene Change

"You two better list to what I have to say got that." Commanded Ino

"Yeah, yeah we know." Said Shikamaru "Even if we didn't we wouldn't hear the end of it for days. Why are all women so troublesome?"

"What was that Shikamaru!!!" yelled Ino, who now started to chase after Shikamaru as a way to relieve her stress at not getting to be on Sasuke's team and getting stuck with the sons of her fathers old teammates.

To Be Continued…

This chapter was kind of hard but at the time I created this story I was thinking more advanced so try to be patient because hopefully I will be able to take this story farther then what I have so far. And like usual if you have a question just review or private message me and I'll try to respond to your question in another private message or at the begging or end of the next chapter.

P.S. the person that flamed my story and told me I should quiet this story theirs a reason this site is called with the slogan "Unleash your imagination." So for your answer I'll still be working on this story until I either can't or get writers block so read this story if you want or not makes no difference to me.

That and grow up taunting someone you don't know is a large sign of immaturity. Plus if you want to be a writer or anything you need to keep an open mind on what other people are saying or doing. You might just learn something from them.

Fun Fact of the Chapter

Math and Music are used every day in a person's life. From the numbers you count on what your buying to the noise you hear having a rhythm that works.