The episode opens with highlights of what happened previously as Chuck and Tucker find themselves in a locked mirrored room as they witness their did Abe get totured by way of electrocution. A deep synthesized voice gives Chuck all ultimatum in which he either produces the location of The Intersect or his father dies. Cut to Abe taking out two baddies and then escaping inevitably freeing his two sons, but no before calling for the cavalry by way of a CB radio. Cut to Casey and Sarah sharing a moment in which Casey says that Sarah is his partner leading to him getting a call about Josiah Gates' extracurricular activities, as well as, finding out Chuck's location thanks to Abe. Then the biggest surprise is revealed as Tucker Gaines is in fact the clone of Josiah Gates revealing to Abe that it was all planned from the pictures to being herded to Fresno inevitably meeting Tucker's 'mom'. Tucker shoots Chuck, Chuck sweeps his leg, Abe and Chuck escape leading them to be chased by the baddies to the edge of a cliff. Sarah and Casey arrive in the nick of time but Tucker shoots Abe seriously injuring him who then is about to shoot Chuck when Abe punches him as Chuck trips him causing his death as he falls to his rocky doom. The day is saved once again…or is it…Chuck collapses leading Jax to look at team Chuck as say that he's crashing. The scene begins with Helicopter landing at the warehouse helipad and the cut to Chuck being wheeled into the medical facility with Jax in the lead followed by Sarah and Casey
Jax: turning around and looking at Sarah and Casey You two have to stay here…you did your job…now let me do mine.
Casey: Come on Walker
looks at Sarah and then leads her to the waiting room
As Jax is about to wheel chuck in Sarah gets away from Casey she calls out Jax's name who stops to see what she wants
Jax: looks at Sarah Yes…Agent Walker…is there a problem?
Sarah: looks at Jax No problem…looks at Chuck...just take good care of him please…he's important to me…us
cut to Sarah looking at Chuck and holding his hand
Jax: smiles as he looks at Sarah holding Chuck's hand Don't worry Agent Walker...puts hand on her shoulder and leans in closer…I'll bring him back to you…I promise.
Cut back to Sarah smiling as she sees doors close in front of her. A single tear falls leading to Casey to stand behind her
Casey: gruff tone Walker...we got a problem.
Sarah: wipes her face, regains her composure, turns around What is it?
Casey: looks at Sarah Something happened when they transported Abe.
Sarah: Is he dead?
Casey: low growl No...the helivac that was supposed to transport Abe to the warehouse ended up at the hospital where Ellie and Devon work at.
Cut to Sarah who has a serious look on her face as you cut to Chuck face as he's being prepped for being the rebooting process by Jax and his team. Cue Chuck intro
Fade Out
The scene begins with Ellie and Devon at the hospital drinking coffee after an early morning shift. You see them walking down the corridor having a conversation as they pass the elevators that lead to the helipad. All of a sudden, they hear a ding behind them leading Ellie to glance behind her for a second or so to see/hear two of their fellow doctors wheel out a fresh patient. Thinking its just business as usual, she turns around sipping her cup of coffee all-the while talking to Devon about their dinner plans later tonight when she overhears the two docs' conversation as they stop for a minute as another doctor approaches
Doc 1: walking up What do we got?
Doc 2: Male…55 years old…gun shot victim…entry wound on the upper extremities…possible damage to his lungs…pulse weak…hypertensive…blood pressure is 90/60.
Doc 1: looking at Abe Prep him for the O. R. stat…looks at doc 1...What's his name?
Doc 3: looks in wallet Abraham…Abraham Bartowski looks back at Ellie
Cut back to Ellie who stops for a dramatic pause, drops her coffee, turns around and immediately turns around sprints towards the three docs wheeling Abe into the o.r. When she catches up to him she sees the prone, seemingly lifeless body of her dad causing her to freak outs as Devon stands by her
Ellie: freaked out tone Dad! Can you hear me? looks at the three docs Was anybody else on the helivac…my brothers…Chuck…Tucker?
Doc 2: Sorry Dr. Bartowski…they weren't on it.
All three docs lead Abe to the operating room as Ellie stands there in shocking silence as she not only sees her father shot, but also fearing what may have happened to Chuck and Tucker. She starts pacing back and forth beginning to freak out when Awesome stands in front of her
Awesome: gives a comforting hug to Ellie Its going to be okay babe…those guys are the best…they'll fix up your dad and trust me…Chuck and Tucker are…
Ellie: interrupts him giving a serious look If you say awesome…I'll knee you in the family jewels.
Awesome: thinking of word Okay…they're okay…I know it.
Ellie then rests her head on Awesome's chest when she suddenly looks up at him
Ellie: look of concern in her eyes Sarah!
The scene switches from the hospital back to the Warehouse where Casey and Sarah are in the middle of talking with Beckman and Graham
Graham: serious look The ball was seriously dropped on this one Agents.
Casey: serious tone What happened?
Beckman: Lines of communication were crossed up amidst the chaos during transportation out of Point Fermin Lighthouse. Needless to say we have a situation on our hands as Carmichael is now at a civilian hospital that Mr. Bartowski's currently at.
As Beckman says that Sarah receives a phone call and when she picks it up its Ellie on the phone sounding frantic
Sarah: looking at Beckman, Graham, and Casey while on phone Ellie…hey…slow down…your not making any sense…breathe…what happened…what…I'll be right there.
Graham: looks at Sarah Go….we'll figure out what to do while you go and talk with Chuck's sister.
Sarah leaves for the hospital as the scene ends with the camera slowly backing away as you see Casey standing in front of Beckman and Graham talking strategy
Fade Out
The scene begins with Sarah walking into the hospital and then cut to her meeting up with Ellie, Devon, and Morgan who got the call from Ellie about his best friend/brother. Ellie sees Sarah and she immediately runs up to her to hug her
Ellie: look of worry I'm glad to see you
Sarah looks at Awesome and waves leading him to wave back
Sarah: How is your dad?
Ellie: biting her fingernails Still in the operating room…right now I'm worried about where Chuck and Tucker are…they could be hurt…or…
Morgan: cuts her off Hey…don't say it…they're all right…if this were a movie…
Ellie: glares at Morgan This is not a stupid movie Morgan…grow up and stop being such an idiot!
Awesome: Whoa babe…that was not Awe….
Cut to Ellie glaring at Awesome who quickly protects his family jewels and then stands behind Sarah
Sarah: puts her hand on Ellie's shoulder Hey…calm down Ellie.
Morgan: chimes in She's right…I was just trying to lighten the mood and what do I do…I make it worse.walks off feeling low
Ellie: angry tone This is serious situation Morgan…why…uhhhhhhh throws hands in the air as she runs her fingers through her hair
Awesome: chimes in I'll go talk to the little guy.
Ellie: looks at Sarah How come you aren't freaking out about this? You're pretty much part of the family…you're like a sister to me.
Sarah: grins at Ellie I am…I guess I'm still in shock about the whole thing.
Ellie: smiles at Sarah You know…since you entered Chuck's life…his smile has come back…something that I never thought I would see again. You're an angel and I for one would be proud to welcome you into our family.
Ellie hugs Sarah who has this touched look on her face. Ellie then takes a walk to clear her head. Cut to Awesome who finds Morgan sitting at a table drinking grape soda
Awesome: sitting down Are you okay?
Morgan: looks down and with reflective tone Yeah…we're life partners you know…soul mates…Chuck and I.
Awesome: giving Morgan a weird look Morgan…do you want tell me something?
Morgan: looks at Awesome Oh…no I didn't mean it that way…we're brothers/best friends… the dynamic duo…Batman and Robin…you know. He's my been my guide…conscience…always been there for me to bail me out even when I screw up. I would be lost without him because to be perfectly honest…he's my hero. He's always been there for me through thick and thin. He has a hot older sister…cut Morgan looking at Awesome who is raising an eyebrow...an old sister who loves him and is always looking out for her younger brother. I envy him.
Cut Awesome putting his hand on Morgan's shoulder and then you see Ellie in the background smiling after overhearing the conversation. Just as she turns around she sees Casey walking in talking to Sarah and as she walks up to the two of them two men in suits walk in asking for Dr. Ellie Bartwoski
Ellie: walking up I'm Dr. Bartwoski...what's this about?
cut to Morgan and Awesome walking up
Suit 1: Is your brother Chuck Bartowski?
Cut to Casey looking at Sarah
Ellie: looking concerned Yes…is he hurt…what…tell me?
Suit 2: We need you and your family to come with us.
The scene ends with the two men leading Casey, Sarah, Ellie, Awesome, and Morgan to a limo equipped with windows that are aren't able to see on the outside or inside heading off to the warehouse
Fade Out
The scene begins with Casey, Sarah, Ellie, Awesome, and Morgan being taken to the warehouse, which the two men in suits give them a cover story of Chuck being transported to a special hospital dealing in severe head trauma. The conversation begins
Ellie: frantic tone Is my brother okay?
Suit 1: He, along with a Mr. Tucker Gaines, was involved in car jacking with your dad unfortunately being shot and left to die.
Morgan: Not good.
Casey: slapping Morgan upside the head Don't make me throw you out of this car
Suit 2: looks at Morgan and Casey inevitably chiming in Anyways…as far as we know, the car jackers got desperate and decided to take your brother and Mr. Gaines hostage when cops arrived leading them to a wild chase. From what we could gather there was an apparent struggle inside the car causing it to become erratic leading it flip over.
cut to Awesome holding Ellie's hand
Casey: Get to the point…what happened to Chuck?
Suit 1: Mr. Bartowski…suffered a sever head injury…he's unconscious, but in stable condition?
Sarah: And Tucker?
Suit 2: Unfortunately, Mr. Gaines didn't make it. His injuries were too severe. He died on the spot as well as the 2 other suspects.
Cut to Ellie crying and being comforted by Awesome with Morgan sitting there quietly as Chuck and Sarah look at each other knowing the truth. The scene moves from the limo to the inside of the warehouse where they're immediately guided to medical wing. When they get there, they are greeted by Jax
Jax: Hi...I'm Dr. William Jax…head trauma specialist for Mr. Bortwoski.
Ellie: looks at Jax How is my brother doing?
Jax guides them down a hallway to a large window where they see a number of doctors around Chuck who is laying down with wires attached to his bandaged head being monitored closely
Jax: breathes in/out Its touch and go right now…with this serious type of head injury we need to proceed with caution. It will take some time and we have the most advanced state of the art equipment to save your brother's life…so leave it in our capable hands.
Ellie: Thank you doctor…you don't know how much this means to me…and for Sarah.
Cut to Sarah looking at Ellie
Jax: You're welcome…in the mean time feel free to stay on this floor…its equipped with accommodations such as a kitchen…beds…soda machines…dvd's…big screen tv…showers…whatever you need. I'll leave my cell phone number with all of you.
Morgan: points finger in air Ummm…you wouldn't happen to have an Xbox or the game call of duty?
Casey: looks at Morgan giving a low growl Come here!
cut to Morgan hiding behind Jax and stopping Casey
Jax: looks back at Morgan As a matter of fact we do…its near the big screen tv.
Morgan: smiles Sweeeeetttt! looks at Soda Machine down the hall and thinks out loud Double sweet…grape soda.
Ellie: looks at Jax Don't mind him…he was dropped on his head as a child.
Cut Jax chuckling then leaving to attend to Chuck. The scene with everybody except Morgan who is partaking in grape soda down the hall is looking at Chuck being taken care of
Fade Out
The scene begins with montage of clips with Ellie looking at her brother as you see a combination of Awesome, Casey. Sarah, and Morgan keeping her company. You then cut to a short clip in which Jax tells everybody that he's stable and will be in the recovery room shortly leaving everybody elated. He then takes Sarah and Casey aside to talk to them
Jax: whispering The original intersect is completely wiped away. We'll download the beta version of the intersect Beckman and Graham sent us when Chuck is fully recovered.
Sarah: relieved smile Thank you
Jax: smiles You're welcome…Chuck is one remarkable young man to have you guys.
Casey: smirks Bartowski's a fighter…besides…I'd kill him if he died.
Cut to Sarah and Jax looking at Casey. Cut to Ellie sitting next to Chuck's bed when Morgan walks up drinking a grape soda in one hand and holding a cup of coffee in another for Ellie
Morgan: hands Ellie cup of coffee Coffee?
Ellie: grins Thanks Morgan...I appreciate it.
Morgan: waves his hand Nah…its nothing. It's the least I can do for my best friend's sister.
Ellie: turns to Morgan Listen…Morgan…I would like to apologize for what I said earlier…telling you to grow up…
Morgan: interrupts her Hey…I needed to hear that…it was a wake up call for me to not rely on Chuck so much.
Ellie: grins No…I was angry and for what its worth…I'm glad that you're Chuck's friend even though you can be creepy…a screw up at times…
Morgan: gives a look to Ellie Okay…are you trying to make me feel better or depress me even more.
Ellie: Smiles Sorry…after all he's been through with Stanford...Jill...Bryce...I should thank you for being there for him and as much as I hate to admit this…
Morgan: looks at Ellie What?
Ellie: looks at Chuck through the windowY ou're part of the family…looks at Morgan and as Chuck's hot older sister…
Morgan: eyes widen You were listening…
Ellie: grins and sticks her hand out Friends?
Morgan: shakes Ellie's hand Friends…
They both looking at Chuck lying their peacefully in his bed when Morgan puts his arm around Ellie
Ellie: The no touch policy still stands
Morgan: removes his arms around herGotchatakes a sip of grape soda
The scene ends with Ellie and Morgan having a moment together as they watch Chuck sleep
Fade Out
The scene begins in Jax's office as he is in the middle of talking with Beckman and Graham about how wiping away the original intersect was a complete success
Beckman: How is Mr. Bartowski doing?
Jax: breathing out a sigh of relief We were able to stabilize him and completely shut down his brain function in order to wipe away signs of the original intersect entirely. Thankfully the hard part is over…he's currently in the recovery room…the tricky part will be installing the new beta version of the intersect and Chuck has to be awake for this in order to do it.
Graham: serious look I think we should reconsider installing the new beta version of the intersect in Mr. Bartowski.
Jax: confused look Why?
Beckman: The original intersect is no longer functional and with the beta intersect fully operational here in Washington we have no use for Mr. Bartowski. It stands to reason that the only logical choice is to cut our losses, which means Chuck must be eliminated.
Jax: angry tone I disagree…I have a highly vested interest in this. Its my call to make.
Graham: looks at Jax So do we Mr. Jax…its in our best interest and for yours as well that the files we sent you containing the new Beta version of The Intersect be destroyed. It's a matter of national security of course…you should know that.
cut to Jax forming a fist showing his anger
Beckman: nods Excellent job…you are doing your country proud. screen turns off
The scene ends with a look of seriousness on Jax's face as he finds out from Beckman and Graham Chuck is no longer needed. The episode ends with a close up of Chuck in the recovery room with everybody around him happy that he is alive
Fade to Black