Ok, so I have been away from this story for quite a while. I have not been able to finish bio-shock cold war mainly because I have had extreme writers block with this one. I can tell you guys how it was supposed to end.
Eleanor was to find a big sister suit that Andrew Ryan Jr. had built for her, for one reason or another. She was to use that against an evil Delta. After killing Delta she mourns for a bit and then goes after Jack Ryan who is now super charged and super dangerous. They fight a fierce battle and it appears that Eleanor is done for. However Andrew Ryan Jr. rescues her and the both team up and apparently kill Jack Ryan.
Now we end with Andrew Ryan Jr. reviving Delta as a human again, Johnny Topside. Johnny and Eleanor develop a father daughter bound and eventually leave New rapture for New York city. We end Eleanor's story on a very happy note that the government is no longer after her.
In a twist ending we find out that Jack Ryan didn't die and that in fact Andrew Ryan Jr. is keeping him alive so that he can harvest all of the ADAM in Jack's body. We also find out that Andrew Ryan Jr. is not Andrew Ryan's son but actually Ryan himself. Saying that he put his conscience in a clone before he had Jack kill him. We end with evil laughs.
So that was how I had it planned out. Sadly I was never able to write it, I couldn't do it the justice that it deserved. I tried writing other stories in hopes that I could come back to this one with a fresh take and be able to write it. But that didn't happen. I feel bad that I left you guys hanging this long. This was how the story was supposed to end, so hopefully you enjoyed the ride. And maybe I might come back and write another bio-shock story and actually finish it.