Title: The Right Decision?

Summary: Booth is undercover, Drew is dead, Rebecca is in a coma and Brennan has to take care of Parker, Can she do it? Drama and Fluff!

Disclaimer: I don't own Bones, FOX, Hart Hanson and Kathy Reichs do.

AN: Thanks for the reviews and feedback!!!! So much people reviewed, I was totally overwhelmed!!! Cookies for everyone who reviewed!!!

My dad is always complaining about how much work the household is when you're a single father with a teenage daughter, and that I should keep my mess in my own room and not in the livingroom, so I took a little inspiration from that.

Chapter 2.

Parker was at school, and Cam had given Brennan the day off to spend some time alone, she was glad she had some spare time. She didn't have time for the household and a lot of Parker's toys were all over the living room floor, and the house looked like it hadn't been cleaned in 2 weeks, today she finally had the time to clean everything up.

She couldn't help thinking about the conversation she had with Booth before he left, about people hurting or leaving their children, were they bad parents? She thought so.

But now, she wasn't so sure about that anymore, there were people who left their children because they didn't had a choice, did her parents leave because they didn't had a choice? They did had a choice, they were criminals, it was their own mistake and they left her and Russ to ''protect'' them, but she could never forgive them for the time she had spend in the foster system.

Flashback.

It was a rainy and cold day; she and Booth just finished a case where a father had killed his child. Brennan couldn't help feeling bad about it, Cases like these made her think a lot, about the world and the reason she decided not to have any children.

They sat in the warm and dry diner, she drank her coffee and he ate his pie. The discussion was on again, Brennan had started about him having a child, and he tried to make her understand once again.

''People are so cruel, why have Children if the Parents kill them anyway?''

''Oh Bones, you really don't understand, not every parent does what this murderer or your parents did, most parents have children because they're a product of love, In some cases it goes wrong, like in your case...your parents loved you but they made mistakes and freaked out, I have Parker, I love him and I wouldn't give him up for anything in the world''

''I know you love your son, but what if something happens to you or Rebecca, what will happen to him? He'd probably end up in Foster care between foster parents who don't love him and only use him for their own good''

''No, I'd never let my child end up there, your parents wouldn't have left if they had known your Russ would go away, If something happens to me and Rebecca, Parker would stay at Rebecca's parents but I won't give up my child for anything in the world''

''You are a good father Booth, but if you ever leave your son without a damn good reason, I will kick your butt when I ever see you again''

''I could never leave Parker or you, don't forget that''

A smile escaped her lips as they continued eating and drinking.

End Flashback.

He said he would never leave Parker or her, but he did, and now she was alone, trying to make it all work out so he could be proud of her.

Her eyes were brimmed with tears; this was not the time to get emotional, she thought.

After she pulled herself together again Brennan decided to work on her new novel, her publisher scolded her for the long time between the updates of her book.

She couldn't help it, she had to take care of Parker, do her work at the Jeffersonian, and do the housekeeping, her mind wasn't really capable of writing another book at the same time, besides she didn't even have the inspiration to write a new book, Booth and the cases they worked on used to be her biggest inspiration, but Booth was gone and she only worked with FBI cases on occasion.

FBI deputy director Cullen asked her to work with another agent but she refused she just didn't want to feel like betraying Booth. she only worked with the FBI with dangerous serial killer cases though there were hardly any. It wasn't how it used to be with Booth, every time she walked in the J. Edgar Hoover building, she thought of Booth she wouldn't allow herself to go there anymore, otherwise she would break. Angela told her not to walk away from her feelings, but once again she did.

She started the second chapter of her new novel, Crushed Bones, before Booth left she had a lot inspiration, but now she couldn't come up with anything good to write, ugh I hate writers block, she thought.

''...Kathy walked through the empty hallways of the FBI building...''

No she didn't like that line.

Her thoughts went back to the night Cullen called her.

Flashback

It was 9 pm, Brennan sat behind her desk in her comfortable chair typing the new chapters of her book, She decided she did not like the line she just typed and erased it with the backspace button.

The phone rang, who on earth would still call her at this time of the day, her head told her it could only be Booth.

She answered the phone

''Brennan''

''Dr. Brennan, this is FBI deputy director Cullen'' the voice in the phone told her.'

Uh oh...her mind was racing, what did she do wrong this time? She couldn't remember shooting anyone...would something be wrong with Booth?

''Oh...Hi, uhm...Is Booth alright?'' she asked concerned wondering if something happened to Booth.

''Yes he's alright but I have to inform you...Booth and some other agents got orders to go undercover to track down a terrorist organization, they left by plain 10 minutes ago, to a secret location...''

''What...Why wasn't I told about this earlier?'' she felt the anger rise in her throat

''It's a top secret mission, I was told only 5 minutes ago''

Brennan was now yelling into the phone.

''Can they do that? We didn't even have the chance to say goodbye, what about his son? Doesn't he have the rights to say goodbye..?

''I'm so sorry Dr. Brennan, I really am, I'm pretty pissed off myself; they took one of my best agents without further notice''

''How long will he be away?'' she said slightly calmed down

''It can be a few months or maybe even a year, I don't know it's a dangerous mission, there's a chance he might not come back at all...I'm sorry''

''Okay...bye'' she hung up the phone and looked at the picture on her desk; it was a picture of her and Booth taken by Angela.

With the tears stinging in her eyes she put down the phone, what was she supposed to do?

End flashback.

She buried her head into her crossed arms; she was frustrated not being able to come up with anything good to write. The stress got too much, No, she thought I can't let this take over my life.

When she checked the time she realized how late it was it was, 3 pm! She was supposed to pick Parker up at 3.15 pm

She grabbed her bag and rushed to her car.

AN: Okay I'm not particularly happy with this chapter, it's supposed to be a filler to give a little more insight in how everything happened, the next chapter will be better, it continues with the story.

Next chapter...trouble at School...

Please!! Keep reviewing!! BTW. I'm looking for a beta reader, anyone interested?

TBC