Naruto: Master of the Legendary Pokémon

A/N: Hey everyone, thank you for your reviews. I'm glad this was well met, only surprised no one commented on Mewtwo's reaction to finding out he's going to be a female in this.

Darkca: Naruto will only have the whisker marks. As for the Pokémon abilities, only when he fully taps into their power.

Ace of hell: thank you

Dragon Man 180: Thanks for the Mew idea, and on the birds. Though for them, I'll just leave the wings on the back, with the ability to become cloaks. As for Hinata getting an Eevee, I thought I'd do the same with all the human girls in the harem, just not Eevee's. Each girl will get a Pokémon that suits them best. I was also thinking of adding an anthro female Eevee to the harem, maybe two, one shiny, one not. All Pokémon will be able to switch between evolved forms. I will also be adding evolved forms for Eevee for the types it has not been given yet, at least what I would give.

Edd1460: I'll do that. Btw, where in the manga will I find Renji, I've found him on Wikipedia, but have no idea how his sword works. I'm not a much of a Bleach fan, but may start looking into it.

adngo174: Darkrai will speak a lot more in this fic. Glad you liked that though.

twilight dragon god: The Pokémon are sealed into Naruto.

Disclaimer: I do not own Naruto or Pokémon.

Chapter 2: Six years Later

It has been six years to the day that a ferocious demon was defeated by the greatest Hokage Konoha has ever seen. It was a day for celebrating the victory over the Kyuubi no Kitsune, and a day for mourning the loss of the shinobi who lost their lives. But for one young boy, it was a day of torment and fear.

'Why are they doing this? I didn't do anything to them!' the young boy cried to himself.

"Kill the demon!" "Make it pay for taking our beloved Yondaime!" were just a few of the angry shouts directed at the target of their anger. (A/N: Sheesh, these scenes are so overdone, but harder to write than it looks.)

Their target was the young boy, barely six years old. He ran through streets, trying to get away, but he still couldn't miss the glares and sneers given to him by the villagers. An Anbu shinobi wearing a dog mask looked up from his little orange book, he watched as the child ran by, followed by his pursuers. He then looked back down to resume his reading.

'None of my concern, the little beast deserves it.' He thought.

The boy ran into an alley way, hoping to lose the villagers, but came to a dead end. His right arm was hanging by his side, useless as the shoulder had been pierced with a kunai earlier. His face was caked with blood, the blood dripping from his head when he had been hit with a club. His spiky blond hair was soaked with the red liquid of life. His cheeks were covered in dirt and blood, obscuring three whisker marks on each side. His once-white shirt, now covered in grime from a lack of washing, was full of tears and nearly in shreds. His shorts were nearly two sizes to big on him, equally torn. He turned around to try and get out, only to find the six villagers and two shinobi who had been chasing him. He was trapped, he couldn't get away, he was too hurt to try and fight back.

"Why are you doing this to me?" he cried, tears in his crystal blue eyes, "I didn't do anything to you!"

"You know exactly what you did, filthy demon!" one of the villagers snarled at him.

"This is for everyone you killed. Time to finish what the Yondaime started!" yelled another.

The villagers started to close in on the child, who curled up into a ball and hoped the pain would end quickly.

Within Naruto's mindscape

"This is the tenth time this week they've tried killing him!" Darkrai yelled.

"What!? But it's only Monday!" a small being with lightning bolts for arms cried.

"It's not his fault all those people died! It's yours, you big meanie!" a small yellow fairy with a star shaped headed shouted in the direction of a large cage.

"Grrrrrr!!" came the reply.

"Rotom, Jirachi, calm down! Fox, Shut up!" Arceus commanded. "I, for one, have had enough! I'm going out there to put an end to this now!"

Back in the real world

The villagers were closing in on the boy, when what appeared to be white chakra started to pour forth from him. The boy passed out from the pain, becoming oblivious to what was happening. The villagers watched as the chakra formed into a large horse-like creature. It had a green face and red eyes, with what appeared to be a long bony crest on the back of its head. The villagers also noticed yellow appendages coming from its sides.

"WHAT THE FUCK DO YOU PEOPLE THINK YOU'RE DOING TO THIS CHILD!?" it screamed at them.

One stupid villager shouted back, "This is no child! It's a damn demon and it deserves to die!"

"If you're going to protect it, you'll die to!" yelled one of the shinobi. "Katon: Gouryuuka no Jutsu!"

He breathed out a giant stream of fire, it taking on the form of a dragon. Arceus merely cocked an eyebrow at the attack.

"Hyper Voice." She said, taking a deep breath.

Suddenly the creature let out an enormous scream, snuffing out the fire dragon and knocking the boy's attackers out of the alley.

"What is the meaning of this!?" an old man shouted.

"Ah, so the Third Hokage finally shows. These people, and I use the term loosely, have attacked this child, the one called Naruto."

"Who are you, and what are you doing here?" the Hokage asked.

"Take us somewhere more private and we shall talk. While you're at it, call your shinobi council, leave the civilians alone for now." Arceus replied.

"ANBU, take these people to Ibiki. Let him remind them what happens to those that break the law. Someone get Naruto and get him to the hospital." The Hokage ordered.

"Don't you touch him!" Arceus hissed as an ANBU wearing a platypus mask reached for Naruto. "I will get him myself!"

Before anyone could say or do anything, Arceus started to glow. When the glow died down, there in place of the unfamiliar creature, stood a woman. Her long blond hair went down to her hips, her eyes seemed to glow red, and her skin seemed to have an ethereal glow to it. Her bust was a cup size bigger than that of Tsunade's, while her clothes seemed to be an exact match. Everyone was stunned by the beauty before them, even as she placed her hands over Naruto. Her hands took on a blue-green glow and within a couple of minutes, the glow died down and all damage to Naruto had been healed.

"Shall we go now, and have our talk with your council?" she asked.

"Of course, if you will follow me." The Hokage answered, shaking of his shock. 'and maybe I can find out why you're so protective of Naruto.'

As the Hokage lead the woman to the council meeting room in the Hokage tower, he could only wonder what the future held for Naruto, and Konoha.

End of Chapter 2

A/N: I hope you readers enjoyed this chapter, even if the action was a bit slow. If you want to picture Arceus's human form, picture Tsunade with longer hair, red eyes, and a slightly bigger bust. As for the shinobi council, I writing to where they see Naruto for who he is. Though Sarutobi's teammates and Danzo, I haven't decided. Tune in for the next chapter when Arceus confronts the council, introduces herself and the other legendaries, and speaks with Naruto when he wakes up (as well as some threatening of the Kyuubi).