Naruto: Master of the Legendary Pokémon

A/N: Once again, I thank everyone who has read and reviewed this story. Like all authors, I appreciate the positive feedback I have received.

Mabscottsville: personally, I think the jury's still out on Rotom's status as a Legendary. But it is being added as one in this because the ability to possess machines may come in useful later.

Ok, the human girls who are being added to the harem and their Pokémon partners are as follows.

Hinata – Eevee, Azuril

Hana – Snubull, Houndour

TenTen – Smeargle, Magnemite

Kin – Zubat, Nidoran (F)

Tayuya – Chatot, Nidoran (M)

Isaribi – Magikarp, Feebas

Sasame – Gible, Trapinch

FemHaku – Swinub, Snorunt

Yugito – Meowth, Skitty

If anyone has anymore or different ideas, let me know. Though the girls will have no more than two Pokémon partners.

Disclaimer: I do not own Naruto or Pokémon.

"Talking"

"Kyuubi, Boss Summon, Arceus in Pokeform, Naruto in Kyuubi/Pokémon mode talking, jutsu, Pokemoves"

'Thinking'

'Mewtwo, Lugia talking'

Letters, messages

Place skips

"Kyuubi/Arceus" 'Mewtwo/Lugia' "others" all talking to Naruto

"Naruto talking back"

Chapter 3: Of Meetings

It was late when the shinobi council had finally gathered in the meeting chambers. All the clan heads were there; Hyuuga, Uchiha, Nara, Yamanaka, Akimichi, Inuzuka, Aburame, Haruno, and Higurashi. Danzo and the former teammates of the Sandaime Hokage were there as well.

"Hokage-sama, why are we all here?" yawned a bored looking Nara Shikaku.

The old man sighed, "Some of the villagers have just tried to kill Naruto again tonight."

The response was split into two sides; everyone except Danzo, Uchiha Fugaku, and the Hokage's two teammates, Homura and Koharu, were outraged. Everyone had yet to notice the strange guest who bore a striking resemblance to the Slug Sannin. Unfortunately, her presence was noticed by Danzo.

"Sarutobi, who is this woman here with you and why is she holding the demon brat?" he questioned, glaring at said woman and brat with his one good eye.

The room grew quiet as the heavy pressure of killing intent started up. The levels were like nothing any of the ninja present had ever felt before. Some of the older nin could nearly feel the pressure threatening to cause their hearts to burst.

"You will not call the child a demon in my presence again," the woman said, her voice dangerously low, "or I will insure that you will not live to regret it."

"Arceus-san, please calm down, this is why we called this meeting." Sarutobi pleaded, nearly passing out himself from the pressure generated.

"Fine." Was the curt reply as she released her KI.

"Very well, everyone, as I have just said, Naruto was nearly killed again. By the time the ANBU and I had gotten there, Arceus here had taken care of the guilty parties. She then managed to heal all of his injuries…" the Hokage started.

"If I may interrupt, I think I should just tell them the whole story." Arceus said.

The next few hours were filled with Arceus telling them about the Pokémon world, how she and the other legendaries took their vacation and wound up sealed inside Naruto. She told them of the attempts on his life, the beatings, being fed spoiled food. With a glare at Sarutobi she added how he had been kicked out of the orphanage at four years old.

"How could you not notice such a travesty?" she asked as she finished her tale.

The aged Hokage just put his head in his hands, feeling lower than ever that he had failed Naruto.

Sensing this, Arceus continued, "If you truly wish to make it up to him, begin his ninja training now. Since we are sealed inside of him, we will begin training him in his Pokémon powers. Now since I don't trust anyone too much, I request the kunoichi with the snake mask to …"

"Out of the question! That brat, being trained by the snake bitch! They will destroy the village together!" Fugaku snarled.

"From what I've seen, that may not be a bad thing." Arceus replied coolly. "One more thing, Judgment!"

Everyone froze as a light gray ball formed over her outstretched hand and was launched into the Uchiha's chest, knocking him to the floor.

"How dare you…" he started.

"Sit down now, Fugaku!" Sarutobi roared as he snapped out of his funk. "Arceus-san, that was uncalled for!" he continued as his temper started to cool off.

"What? That was at a low power setting, anything stronger would have knocked him through the wall." Arceus protested.

"Regardless, what was that attack anyways?" the old man asked as he sent an ANBU to retrieve Anko.

"That was my own special attack. Only I can use it, and 15 other Legendaries have an attack only they can use."

"I have a question Arceus-san. Why do you request Anko's help in training Naruto in your arts?" asked Hyuuga Hiashi.

"We do not need help in the Pokémon training," Arceus replied with a snicker. "Sorry, inside joke. We need help in the ninja arts, and my reasons should be obvious." She continued, her voice going flat.

"Fair enough, and now, I have a question." Inuzuka Tsume jumped in, trying to break the tension. "How is Naruto is asleep through all this?"

"Oh that! When I healed him, I used Hypnosis to keep him asleep so he could at least meet the others. I also felt…"

SLAM! "The sexy and single Mitarashi Anko reporting for duty, sir!" a loud and exuberant voice rang out as the door was kicked in.

"Loud, troublesome woman." (A/N: we all know who this is.)

In Naruto's mindscape

(A/N: ok, I have grown tired of Arceus talking to the council and have decided to jump to Naruto meeting the other Pokémon. The results of the first meeting will be revealed towards the end of the chapter.)

Drip, Drip, Drip. The sound of dripping water caused Naruto to wake up. The first thing he noticed was that he was standing in a sewer, ankle deep in water.

"I guess they finally decided to throw me away." The little boy sighed.

"Hee, hee hee!" came a very amused and cute-sounding giggle.

"Who's there?" Naruto cried out, starting to get frightened.

"Don't worry, Naruto-kun, I won't hurt you." A feminine voice purred in his ear.

Naruto jumped as he spun around, and promptly fell on his butt. What he saw was a small pink cat with blue eyes, eyes that sparkled with mischief. The strange thing that he noticed was that it was floating.

"What are you? Where are we?" Naruto asked.

"My name is Mew and I'm a Pokémon. As for where we are, I'll just have to introduce you to the others first. Now follow me!" she shouted as she settled into his arms.

"How am I going to follow you if I'm carrying you?"

"I'll just tell you where to go. Now, walk straight ahead. Turn left here, make another left, left again, and another left."

Naruto followed the directions Mew was giving him when he noticed something.

"Hey! We just went in one big circle!" Naruto pouted at being tricked.

"Sorry, couldn't resist. I promise I'll show you the way this time, on one condition." Mew apologized, floating out of his arms and turning to face him.

"What's that?" Naruto asked, fearing the condition.

"Tag! You're It!" Mew laughed as she flew off.

Naruto laughed too as he chased the small cat, never losing track of her. He kept chasing her until…

"Gotcha!" he shouted as he finally caught her.

His eyes widened as he took in the view before him. Mountains, lakes, fields, forests, all kinds of places were here in the sewers. But, in the back, there was a large cage. Naruto was so entranced by the sights that he never heard Mew sigh in contentment as she snuggled into his arms.

"Everyone, time to come out and see Naruto-kun!" she called out.

If Naruto had been amazed by the scenery, he was absolutely stunned by the multitude of creatures that came forth. There were all kinds of birds and dogs, even a few dragons. There were a few creatures that Naruto couldn't figure out, as they did not look like any animal he had ever seen.

"Hello there Naruto-kun, my name is Articuno." A large blue bird said. It had a long tail and a crest with three points on its head. There was also a bit of a chill coming from it.

'My name is – ' a large purple and lavender cat started as its words seemed to run throughout the entire area.

"What happened?" Naruto screamed as he started crushing Mew in his arms.

"Naruto-kun, choking, not breathing!" Mew wheezed out.

"Sorry, Mew-neechan. But what happened?"

"Mewtwo tried speaking to you by telepathy, which means to communicate through the mind. But it seems to have been a bad idea considering where we are." A tiny hedgehog with a flower on its back chirped up.

"Who are you? And what do you mean 'where we are' ?" Naruto asked.

At this, all the creatures tensed up, not knowing how to answer this.

"My name is Shaymin, and to answer your other question: What do you know of the Kyuubi?"

End Chapter Three

A/N: and I'm going to stop right there for now. This part is getting just a bit long for me right now, plus I don't know how to go about having the Pokémon tell him about the Kyuubi. Hopefully, the action will start to pick up soon. I do wish to know if there are any other girls out there that anyone wants added to the harem. If I add Sakura, she'll get an Oddish I'm not sure what else. If Ino is added, she'll get Budew and Abra(I won't be cruel enough to give her Spoink). I was thinking of giving Naruto an actual bloodline, but felt it would be overkill. I do, however, have an idea that I want to use later. He will be descended from the Kuchiyose clan; if you want to use this idea for a bloodline, let me know and I'll send you the details. Hope you enjoyed this chapter.