Naruto: Master of the Legendary Pokémon

A/N: Once again, I thank all those who have reviewed; it just shows what you think of my story.

Ok, I have the harem planned out, just written in a notebook somewhere for my benefit. You guys have to wait and see as the girls are added.

Disclaimer: If I owned Pokémon, Ash would be a better trainer. If I owned Naruto, Naruto would have actually been trained by Kakashi and ero-sennin. Sadly, I own neither one of them.

Chapter 4: Moving in with Anko and training begins

"My name is Shaymin, and to answer your other question: What do you know of the Kyuubi?"

Naruto looked confused. "The Forth Hokage killed it when it attacked six years ago, didn't he?"

The Pokémon all shared sad looks, knowing this was not the case.

"Naruto-kun, we have no doubt that the Yondaime was strong, but even he did not have the strength to kill such a creature." Articuno began.

"Does that mean it's still out there?! We have to tell someone!" Naruto started to panic.

"Naru-chan, calm down. It has been defeated, so there is no danger." Mewtwo continued.

"If it isn't dead, then what happened to it?"

"You see that cage back there?" Shaymin asked. Naruto nodded.

"We'll tell the truth when we reach it, we want to introduce you to everyone. Now, follow me!" Shaymin finished as she hopped onto Naruto's head.

"Um, you're not going to make me go in circles like Mew did, are you?"

Mew couldn't help but scratch the back of her head at the looks the other three gave her.

"Don't worry, I'll make sure you go the right way." Shaymin reassured the boy.

The group of five started walking across a field, Naruto carrying Mew and Shaymin, Mewtwo floating along, and Articuno hovering overhead. They had only made it a third of the way across when they met three large dogs. One was yellow with a purple cloud on its back, the second was brown with red marks on its face, and smoke coming out of its back. The third was blue, with a purple mane, a crystal coming from its head, and twin tails curling around to the front.

"Hello there, Naruto-kun, my name is Raikou." Said the yellow dog.

"I'm Suicune, and this is Entei." The blue dog spoke up.

"I can introduce myself, you know." Entei growled.

"Yeah, yeah. So, where are you guys going?"

"Nice to meet you." Naruto greeted with a small bow. "We're going to that cage back there where Shaymin's going to tell me about the Kyuubi. Want to come?"

"We'd love to. Safety in numbers after all." Raikou answered.

Everyone started off again, Naruto missing the shared look between the dogs. Along the way, he met Articuno's friends Zapdos, a yellow bird with spiky feathers, and Moltres, an orange bird who appeared to be on fire. They were following along with Articuno hovering above the group on the ground. They were walking past a forest when a small green fairy, and a strange bird flew out to meet them. The bird was blue and yellow with ring like wings and a moon shaped head.

"Hi, I'm Celebi" the green fairy said.

"My name is Cresselia. Pleased to meet you Naruto-kun." The bird said in a melodious voice.

"Hello, um, how does everyone know my name?" Naruto asked.

"We know a lot about you, and we'll tell you at the cage." Celebi answered.

The group was walking through a clearing next to a lake where they met the three sprites: Azelf, Mesprit, and Uxie. Each had two tails, but different heads. Azelf's was blue with a small point coming out of the back, while Mesprit's was pink with four ear-like appendages. Uxie had a yellow head that looked like a pumpkin (A/N: at least it does to me). She always kept her eyes closed lest the person she looks at loses their memory. They met up with Groudon and Heatran, both of whom emerged from a volcano. Groudon was bipedal, covered in spikes, and had a reptilian look to her. Heatran walked on all fours and looked turtle-like. Naruto wound up carrying Mew in his arms, Shaymin on his head, Uxie was clinging to his right arm and Mesprit to his left. Azelf just settled to hang on his back looking over his shoulder.

"Naruto-kun, are you ready to meet Darkrai?" Azelf said, pointing upwards.

Naruto looked up, and saw a terrifying sight, at least in his six-year old mind.

"A Ghost!" he screamed, running to hide behind Groudon's leg.

He had peeked around to find a strange scene; everyone was chuckling, the ghost was off in a corner with a blue cloud of depression over it (A/N: think Brock when Ivy's name was said), and Mew was turning blue. WHAT?

"Sorry, Mew nee-chan!" Naruto apologized as he let up on his grip on the blue-turning-pink cat.

"That's…alright,…Naruto-kun." Mew wheezed out.

"Naruto, that's no ghost. That's Darkrai, one of our friends." Shaymin said, shaking off her amusement.

Naruto walked up to the Pitch-Black Pokémon, and shifting Mew to one arm, put a hand on her shoulder. She looked up at him.

"I'm sorry, Darkrai. I didn't mean to scream like that"

"It's okay, Naruto-kun. I know I can look scary sometimes, sorry if I scared you"

"I'm not so scared anymore, when I get a better look, you look pretty cool."

The ever-growing group met up with Rotom in what appeared to be an abandoned building, while they found Jirachi in a valley with Stonehenge like structures. Rayquaza flew down from the top of a very tall tower, and Deoxys was located near a meteor crash site. Regirock, Regice, Registeel, and Regigigas were discovered near some ruins. Naruto was stunned when he met the four Regi, mostly Regigigas on account of how big she was. The group had been walking along the shore of an ocean when…SPA-LOOSH! A large blue whale with large fins breached from the water, carrying two small water fairies, and followed by a sea bird with hand like wings.

"Hello there, young Naruto. My name is Lugia" said the sea bird.

"I'm Kyogre." The whale said.

"I'm Phione, and this is Manaphy."

Phione had a small red gem on her chest, two blue spots above her eyes, a ball on her head, and one antenna attached to the ball. Manaphy had four yellow spots above her eyes, and two antennas.

"Pleased to meet all of you, now could someone tell me how there is an ocean here?" Naruto asked.

"All in good time. Uxie, Mesprit, Celebi, Jirachi; let's get Kyogre." Azelf said.

The five all flew around the beached whale, and using their psychic powers, lifted her up and started to carry her. Before long, they had reached the cage. Along the way, they had been joined by Ho-oh, Latios(the only male in the group), Latias(his twin sister), Dialaga, Palkia, and Giratina. The cage had a piece of paper on it with the kanji for 'seal'. However, before anyone could say anything…

"So, my jailer finally comes to visit me. Any last words before I rip you to shreds!"

Not waiting for those last words, a huge claw shot out of the cage, heading for Naruto. The young blond had lost all control of his legs, unable to run or get out of the way. He had shut his eyes, waiting for it all to end.

"Release me this instant!" the voice raged.

Naruto looked up to see what had happened. The claw had not finished its decent because Groudon and Regigigas had rushed to intercept it, each grabbing a toe/finger.

"Crush Grip"

"Metal Claw"

The two attacks caused the beast to pull back his injured digits, roaring out in pain and frustration. All the Pokémon decided to get out of range, in case he tried to attack again.

Letting go of Mew, Naruto looked around at the gathered Pokémon. He had to know now.

"Why is the Kyuubi here? Where is here?" the young boy asked, tears of frustration welling up in his eyes.

"Naruto-kun, the Kyuubi couldn't be killed. The only way to stop it seems to have been to seal it away. The fox, and all of us, are sealed away inside of you." Giratina said, remorse in her voice.

Naruto's eyes widened in shock, it suddenly all made sense. The harsh words, the hate-filled glares, the abuse, everything.

"Am I really a demon then? Did I really kill all those people?"

"Of course not, dear child. You are merely the prison." A new voice said, one that radiated ultimate power. "You are nothing more than a good little boy, who has been treated wrongly for something he had nothing to do with."

Naruto had turned around to see the new speaker, and saw a large white horse like creature.

"Who are you?" he asked in complete awe.

"My name is Arceus, the very first Pokémon. While I'm at it, I do not believe the fox was fully in control that night."

"WHAT!!!" was the major response.

Instead of answering any questions, Arceus turned towards the cage.

"Double Team." She said.

Instantly, there were 17 Arceus's, each one had taken on a different color, one for each Pokémon type.

"Judgment." 17 orbs shot out at the fox, hitting him right in the face.

"GRAAAAAHHHH!!!!" he yelled, before falling over.

Slowly, the fox started to stir. When he had opened his eyes, all the anger and malice was gone, only to be replaced by gratitude and remorse.

"Thank you, for releasing that man's control over me. And Naruto, I deeply apologize for everything that had happened to you because of me."

"I forgive you, I guess, you seem different now than what people say, but I don't know what's going on."

"We will tell you later, Naruto-kun. But now, it's time to wake up and talk to the Hokage." Arceus interrupted, sending Naruto back into consciousness.

Tower in Forest of Death, back in real world

Anko and Sarutobi watched as Naruto sat up in the bed, rubbing his eyes and yawning at the same time. Anko could hardly keep from squealing at the cute sight.

"Naruto, how are you feeling?" the Hokage asked.

"I'm fine, jiji, I just want to know why you didn't tell me about the fox, and the Pokémon."

"Naruto, I wanted to, but I wanted to protect you. As for the Pokémon, I didn't know about them myself until recently. I must ask you now, what do you plan to do now that you know about the fox?"

"I'm going to become the best ninja in the village and show everyone that I'm not a monster!" Naruto shouted with the utmost confidence. "And then I'll become the greatest Hokage ever!"

"Well said, gaki." Anko said.

"Now Naruto, I want you to get a good night's sleep. Tomorrow, we will be getting you ready for the Academy next week, when you will begin your ninja training."

"Alright, jiji."

"Don't worry kid, I'll be here tonight in case you need something." Anko informed the blond jinchurikki.

"Who are you?" Naruto asked.

"My name is Mitarashi Anko, and you'll be staying here with me while you're in the Academy. And until you can get your own place after you begin your career as a shinobi."

"Okay, Anko-neechan. Good Night!"

The next morning

"Wake up, Gaki!"

Naruto woke up with a start as he felt someone jump on the bed he was in. He noticed it was Anko, wearing her trenchcoat from yesterday, as well as black pants and a red shirt.

"Alright kid, we're going to go meet up with the Hokage so we can get you ready for the Academy. So start getting ready."

The area around Naruto's stomach started to glow and when it died down, a woman was standing there. She had long blond hair with streaks of green, and red eyes. She wore a green shirt that barely contained her G-cup sized breasts. She wore blue pants over equally shapely hips.

"I'll join you two." Arceus said.

"Do you really think that is necessary?" Anko asked.

"Anko, the fools who can't see past the Kyuubi are the same fools who can't see past your former sensei. How do you think they will act seeing you and Naruto together?"

"The Hokage will be there –"

"Yes, and given his record with Naruto, I have little faith in him. Anko, I will not tolerate the way they treat Naruto, nor will I tolerate the way they treat you. Now let's go!" Arceus had finished the talk while holding Anko's chin in her hand.

The Hokage tower

It was still fairly early in the morning when the Hokage and a young boy of around 11 were waiting for our trio. The boy had jet black hair and dark eyes, with some lines near them. Before too much longer, Anko, Arceus, and Naruto showed up.

"Good day, Anko-san, Naruto-kun, Arceus-san. I'm glad you could show up. I want - "

"Sama." Arceus interrupted.

"Excuse me."

"Sarutobi, you are to refer to me as –Sama. For three reasons: one; I have lived for more than an eternity, making me older than you. Two; I am a goddess, out ranking your title as Hokage. Three; considering what Naruto has gone through in his life, especially the last two years, you have not earned enough of my respect."

"As you wish, Arceus-sama. Now, I want to introduce you to Uchiha Itachi. He will be joining us in our errands today to get Naruto prepared for the Academy."

Arceus took a good look at Itachi, her eyes glowing slightly. A few seconds later, they stopped.

"Well, I see we'll get along better than your father. Your soul has less of a taint to it."

"He did forbid me to come on this trip. But I am a shinobi of the village and my orders come from the Hokage. Plus I wish to see Naruto get ready, as my little brother is already set for the Academy."

With that little exchange, the group of five set out. Their first stop was a clothing store for civilians, since Naruto wasn't a shinobi yet. Of course, as Naruto walked in…

"Get out of here demon! I already told you that I won't serve the likes of you!" the shop keeper shouted, before noticing the village leader behind the boy.

"If you will not serve Naruto-kun here, then you will not receive patronage from me. Nor will anyone else shop here if I can help it."

The group left the shop, ignoring the pleas of the shopowner. When they were outside, Itachi proposed an idea to the Hokage.

"Hokage-sama, if I may, I wish to put a genjutsu on this shop in order to deter business here."

"Make it so, Itachi-kun."

The Uchiha prodigy went through same handsigns and slammed his hand against the top of the doorframe.

"So, Itachi, just what will this jutsu do?" Anko asked.

"It will make the clothes inside the store appear to be unbareable and very unpleasant for purchase."

"Like what, patched and torn, and moth-eaten." Arceus asked.

"Worst. They will be nothing but green spandex and orange leg warmers. There will be a standee of Maito Gai, complete in Good Guy pose © with the ping in his teeth. The worst part will be no matter where you are in the store, it will appear to be facing you. Playing over the loudspeaker will be that song he sang at the karaoke bar."

"That is just plain evil. I like it!" Anko, clearly enjoying the idea, cackled.

"What song is this?" Sarutobi asked.

Anko pulled out a tape recorder and pushed the Play button.

I'm not wearing underwear today!

No I'm not wearing underwear today!

Not that you probably care

Much about my underwear.

Still nonetheless I gotta saaaaaay!

That. I'm. Not. Wear. Ing. Un. Der. Wear. Tooo. Daaaaaaaaaaaay!

(A/N: if you want to hear this, go to YouTube and plug in 'Real Ninjas' into the search engine. I do not own this song, btw.)

"That has got to be one of the scariest things I have ever heard, and I'm older than time itself." Arceus said.

Finally understanding what was going on, seeing as how that song scared him, gave his opinion on the matter. Ah, the innocence of a six-year-old.

"Wait, does this mean that man is going to go out of business? I don't want him to get in trouble because of me. Please take off that gen-thingy." Naruto started begging, throwing out the one jutsu all children know, the Puppy Dog Eye no Jutsu.

Even the iron will of Itachi could not hold up to that look. With a glance at Sarutobi, who nodded his consent, Itachi removed the illusionary technique.

"Sometimes I think you are too nice for your own good, kid." Anko said, shaking her head.

Elsewhere in the village, sometime later

The group soon found their way towards another store where they hoped they would have better luck, or else Arceus would have something to say. Of course, they were going to find out how powerful she could be.

"You little demon! You will pay for what you did to my family!" some random nin charged at Naruto with a kunai, oblivious to those around him.

He threw the kunai, only for Arceus to knock it aside with her hand. She charged at the man, grabbing him by the neck and lifting him into the air.

"Who do you think you are? Attacking a child with your village leader right here?" she demanded him.

"Shut up bitch! You have no idea what that monster did! He killed my family, and now he's controlling the Hokage!"

Arceus's eyes were glowing the whole time. She then made her opinion known.

"The only monster here I see, is you. I have looked into your soul, and I must say, what I have seen is truly disturbing. I see you have killed, and not in defense of your village. You have killed people who were no threat to you, people who live in Fire country. Children, civilians, women, and people who could not defend themselves. Also, you have raped many women and children, both male and female. You have done this in other villages, sometimes disguised as a shinobi from another village. You have stolen, pillaged, and raided homes. For crimes such as these, I sentence you to Hell!"

People started to scream as the ground opened up, fire shooting out and the howling of demons could be heard. Some tried to climb out, only to slink back in when given a hard look from Arceus. The man screamed when she dropped him into the pit, the demons tearing at him. The screams faded as the ground closed back up. Arceus turned back to the group.

"Alright, let's get back to what we were doing."

The group found a different clothing store, hoping for his sake, that he would be more hospitable. When they walked in, the store owner looked up and smiled, not even batting an eye when he saw Naruto.

"Hokage-sama!" he greeted, "I'm glad you're here!"

The man then went into how the civilian council was forcing the few shop owners who liked Naruto to refuse him service, though they still tried to help him. Even if it was by putting edible food near their trash for him.

"So, what can I do for you?" he asked at the end of his tale.

"We need to pick up some clothes for Naru-chan here," Arceus said, breaking her glare from Hiruzen, "preferably non-shinobi for now. We can wait until he becomes a ninja to get that kind of gear. Now as for what we need, I say three weeks worth of clothes. We need shirts, shorts, pants, socks, boxers, maybe jackets and coats, and maybe a week's worth of shoes."

"Very good, Arceus-sama, do you have any colors in mind?" the storeowner asked.

"Black and red would work well." Itachi said in his monotone voice.

"I think green, brown, and orange looks good." Anko added.

"Perhaps blue, yellow, and white." The Hokage said.

"All good colors for shirts, but at least blue and black for the shorts and pants," The man said, feeling that many colors would not go well. "as for socks, white would be best."

"Does all that sound good to you, Naruto?" Arceus asked the young blond, who could only nod, just a little overwhelmed at all the clothes he was going to get.

"Can I pick out my shoes myself, and my boxers?" he asked.

"Of course you can. We can't not let you have a say in what you're going to wear." Sarutobi said.

"Um, what are boxers anyways?" the chibi blonde asked.

No one could keep a straight face at the innocent question as They all burst out laughing.

"Boxers are underwear, Naruto-kun" Itachi said, trying to hide his own amusement.

Naruto had gotten to choose 14 pairs of boxers: some were plain colors, such as red, blue, or black. Some had different designs on them; shuriken, foxes, clouds, even bowls of ramen. His shoes were all plain themselves, mostly blue or black. Everyone felt they had gotten enough clothes when they all had their arms full with bags, though Arceus had Naruto in one of hers.

"If you ever need anything else, don't be afraid to come on by." The shop owner called out as they left.

"Don't worry, we will!" Arceus called back.

"Bye-Bye!" Naruto waved.

The group had been wandering for a while when they heard a loud rumbling. Everyone turned to look at Arceus, who was looking at Naruto with wide eyes.

"Heh, Heh, Heh." He chuckled sheepishly, scratching the back of his head. "I guess I'm getting a little hungry."

"I suppose it is getting close to lunch." Sarutobi said, smiling at Naruto. "Does anyone have any suggestions?"

"Somewhere with dango!"

"I know a place that serves an excellent shark-fin soup."

Naruto started to look down, having never been in any of the stores or restaurants. Arceus, on the other hand, never needed to eat before in her life.

"Anywhere you choose will be fine, as long as they let Naru-chan in, or else." She said with finality.

The group eventually settled on a barbeque restaurant run by the Akamichi clan.

A/N: I wish to thank all of those who have waited patiently for this update, and for those who didn't, I thank for giving me that much needed nudge when I got lazy. I apologize if this chapter was a little slow at first, but I felt the need to get this stuff through.

The pairings include: Naruto x Hinata x Ino x Sakura x Tenten x Yakumo x Hana x Anko x Kurenai x Hanabi x Moegi x FemHaku x Kin x Tayuya x Karin x Isaribi x Sasame x Temari x Hokuto x Fuu x Yugito x Karui x Samui x Shion x Toki x Haruna x Koyuki x Articuno x Zapdos x Moltres x Mewtwo x Mew x Raikou x Entei x Suicune x Ho-oh x Lugia x Celebi x Regirock x Regice x Registeel x Groudon x Kyogre x Rayquaza x Latias x Deoxys x Jirachi x Rotom x Uxie x Mesprit x Azelf x Dialga x Palkia x Heatran x Regigigas x Giratina x Cresselia x Phione x Manaphy x Darkrai x Shaymin x Arceus x Haruka (anthro Eevee) x Kasumi (shiny anthro Eevee). (Thank kami for Kage Bunshin. This is in no particular order.) I do have plans for Neji, Chouji, Kiba, and Lee, but they will have to wait. Getting a girl will be too troublesome for Shikamaru, and as for Sasuke, I'll just leave the whole Orochimaru thing to your imaginations, cause I will not write such a thing. The only yaoi I can handle is Leon/D from Petshop of Horrors. (It just fits.) Btw, who came up with Itachi's obsession with pocky, and Sasuke's with tomatoes.