Okay, answering time:
To Yoshiki-909: when I combined Emiya with all of his parallel selves and past lives, I also gave him the abilities to connect to those that Alaya might confuse him with. For instance, Alaya could get him confused with her other Counter Guardian EMIYA (Kiritsugu) or someone who is basically a soul using his soul as a physical manifestation (Chloe von Einzbern/Archerko). The only difference between these selves and the parallel selves/past lives, is that Shirou only possesses the abilities and slight memories of them. He does not possess the full memories/personalities of them, unlike Solomon, Angra Mainyu, etc. I used another one of my crazy theories for this. Sorry if you don't like it.
To : I was actually planning on making a sequel to this once it was done (Once this is done, I'll move on to MCU Phase 2), but I'm also going to create a fic where I show what happened in between does time frame. Spoilers include X-Men, Deadpool, Rin with Ishtar Class Card, and others.
To EMIYA14: Thank you for the compliment. I'll try to make them longer. It's just I have school and I have Calculus. (shudder)
Okay, so let's start.
As Shirou watched over the fallen agent, he heard footsteps from behind. It was the agent, Nick Fury.
"Coulson?" he called, running to check on the dead agent. Realizing that he was dead, Fury turned towards Shirou. "I saw you fighting Loki on a security monitor. What happened?"
"What do you think?" he spat. "The guy with the ridiculous helmet killed him."
Fury gritted his teeth. Paramedics ran in to check on Coulson.
"You're going to explain exactly what you're doing here and how you escaped from that jail cell," Fury growled.
Scene Break
After explaining to Fury what happened and that he meant no harm, Fury begrudgingly allowed him to go, but Shirou must have an escort and was not be allowed to exit the Helicarrier. Fury's top agent, Maria Hill, was to escort him. The incarnated hero went to the bridge, where he found Fury talking to Tony Stark and Steve Rogers. He saw Fury show them Captain America cards covered in blood. Curious, Shirou used Structural Analysis on the cards.
Interesting, Shirou thought. Those cards weren't in Coulson's pocket. Why would Fury lie if. . . Oh. I see his game. Well played sir. Well played indeed. His cunning reminds me of the magi back home.
Shirou began watching as Fury began laying seeds of motivation. He used ideals and death of Coulson to get the two heroes to settle their differences and go find and stop Loki. Shirou was impressed at seeing the agent use his friend as a martyr to build their team of heroes, their Avengers.
Scene Break
Shirou and Hill were walking all over the Helicarrier.
"So, you're some sort of magician," Hill asked Shirou.
"I prefer the term magus," Shirou said. "And aren't you still injured?"
"I'm feeling better," she replied. "What's the difference between a magician and a magus?"
"Magicians use magic, magi use magecraft," Shirou replied, bored.
"You're going to have to elaborate, Mr. -"
"Shirou Emiya. My name is Shirou Emiya. Anyways, the difference between magecraft and magic is that magecraft are phenomenons that can be done by science while magic is among the impossible.
"Though now," Shirou said, in thought, "I might be counted as a true magician now."
"What are these impossible magics?"
"You sure ask a lot of questions."
"It's my job."
Shirou smiled. "Thanks for being honest. There are five impossible magics. The first is a mystery, but I suspect that it has something to do with true creation and destruction, being able to create and erase matter and energy. I can do something with my magic, but in the end, it's only created with my own magical energies. The second magic involves the Operation of Parallel Worlds, otherwise called the Kaleidoscope. It not only allows movement between parallel dimensions, but it can also summon unlimited power from other worlds, create imaginary space, travel through time, etc."
"Is that how you got here?"
"Yeah. The master of Kaleidoscope sent me here. I only have limited knowledge on that magic, only the power of a mortal apprentice."
"Okay," Hill noted, she mentally kept track of all the information. "What about the other true magics? You said that there were five."
"Oh, yes. The third magic is one I've actually gotten master of," Shirou said, knowing that being merged with the Holy Grail and Justeaze Lizrich von Einzbern via Angra Mainyu has given the magic of immortality. "The magic is known as Heaven's Feel and allows materialization of the soul. It ascends the soul to a higher plane, allowing the soul to not need a mortal body as a vessel. Heaven's Feel provides true immortality and an inexhaustible amount of magical energy, since the soul becomes analogous to a perpetual motion machine.
"The other two magics are unknown, but the fifth one has something that allows time travel. There are other magecraft abilities that are on level with True magics: the holy sheath Avalon, reality marbles, magecraft spells that reach into the realm of true magic, and existences of powerful unique magical creatures."
Maria mentally noted each of these existences as potential threats to the world. "Are such powers rare or-"
"The existences of true magics are extremely rare," Shirou assured her. "Can I ask you something now?"
"Fire away," Hill said.
"What will it take for me to be a part of this organization?"
"You want to be a part of S.H.I.E.L.D.?" She asked, surprised. "You, the extra-dimensional magician."
"Is that so shocking," Shirou inquired. "S.H.I.E.L.D. seems to be well connected and powerful. I think it would be beneficial to both parties. I include S.H.I.E.L.D. on knowledge of the mystical phenomenons of my world, and it provides me with money and resources for magecraft research. I would never do anything illegal of inhumane. I'll also teach some agents magic."
"So basically, you're planning on joining S.H.I.E.L.D. to milk it of its assets," Hill remarked.
"While giving agents mystical powers."
"You're going to give us super-soldiers?"
"Not how I'd put it but it is possible. I could teach them magic, or I could just give them special mystical abilities, like mystic eyes."
"Mystic eyes?"
"Special magical powers that are utilized via eye. I can create three types of mystic eyes: Binding, which casts paralyzing suggestion spells; Charm, which distorts others view to make the owner as a man of great sex appeal; and Whisper, which hypnotizes."
"Why are you telling me all this?" Hill asked.
"You seem like a good person," he said. "Also, it will probably make S.H.I.E.L.D. think highly of me."
"Thanks for honesty."
"Thank you for listening. When you make your report to S.H.I.E.L.D., don't forget to put me in a good light."
"I'll try to remember that."
The SHIELD (I've decided to stop putting a period after each letter) agent and the magus smiled at each other. Suddenly, Stark and Rogers rushed between them.
"What's the big rush?" Shirou asked.
The duo turned. "Oh, it's you," Steve said. "We could use you. We found Loki."
"What?" Hill demanded. "Where is he?"
"At my tower," Tony said, he then turned towards Shirou. "Now are you coming or not?"
"Why are you being so hostile to me?" Shirou asked.
"Well, you did just kick his ass," Hill said.
"Touché."
"Are you coming or not?" Tony repeated, annoyed.
"Okay, okay. I'm coming," Shirou said. "Agent Hill, please tell Fury. I'm going with them."
"But you're supposed to have an escort!"
"Then they'll be my escort," he smirked, running after them.
"Idiot," the agent said, glaring as they ran off. She then ran off to report to Fury.
Scene Break
Shirou was waiting outside of the hallway. Steve walked out of the room with two people: one was the spy he met earlier, Natasha Romanoff; the other was unknown.
"Hey, Cap," Shirou greeted. "Who's your friend?"
"Clint Barton, AKA Hawkeye," the man said. "Who the hell are you?"
"He says he's some mystic from another dimension," Natasha explained. "He appeared through the same spot as Loki, but he doesn't seem to be related to him."
"I also kicked the asses of Stark, Rogers, Thor, and you at the same time," Shirou added, making Barton stare at him.
"You surprised us," Natasha and Steve said at the same time, annoyed at Shirou's attitude.
"Next time, I plan on making you grovel at my feet," Natasha said, causing Shirou to blink in surprise. Seeing her opponent defeated, the spy walked away with the others in tow, giving off a satisfied smirk.
"Wait, what?" Shirou asked, following the group.
The four walked in the hangar, where they boarded a plane.
"You're not allowed to be in here," a pilot warned.
"Actually," Shirou said, giving him a blast of hypnosis magecraft. "I think you should let us pass."
"Yes, sir," the pilot said, then left the plane.
"Did you just control his mind?" Hawkeye questioned.
"A little," Shirou apologized. "I only like using Mental Interference magecraft when absolutely necessary."
"Try not to do it on us," he said. "I've had enough magical mind controlling mojo for a lifetime."
"I'll try to consider that," he said, then noticing something of interest. "Hey, any good with that bow."
"Of course," he said. "Why do think I'm called Hawkeye."
"Bet I'm better."
"Yeah, doubt it," he chuckled. "Who ever heard of a magic archer?"
"Who ever heard of a circus boy turned secret agent," Shirou asked innocently.
"How do you know that?" Barton demanded.
"Oh, I know everything," Shirou smirked.
"I shouldn't but for some reason, I like you," Clint said. "You're fun."
"Thanks," Shirou said. "If I find Loki, I'll hold him down so you can shoot him with an arrow. Hit his eyes or balls and you get a special prize."
"Sounds like fun," Clint smiled.
"I'd hate to interrupt a passionate bromance but we've got a job to do," Natasha said.
"Aye, aye, Agent Romanoff," Shirou said mockingly, giving the spy a salute. Said spy rolled her eyes in annoyance.
The four blasted out of the base heading towards New York City.
"And so it begins," Shirou smiled.
Ta-da! So, I'm thinking of giving Shirou a love interest. Please post comments to say what you think and to give suggestions.