As Angel attacks rapidly increase NERV is left to defend itself from Angles while Shinji and Asuka attempt to live there life in the few hours of peace between attacks. (M status due to heavy topics such as self harm and suicide. )

He has lost everything. Deprived of identity, wandering across space, until a certain First Angel was launched toward him, not knowing that their interaction will cause the world to change its pace. Suddenly, he's now Shinji Ikari? With his new identity, what would he do in order to have a happy life? Wait, is that a god damn time traveller? What awaits him on his new path? (No OC)

Asuka, Shinji & Rei attempt to support each other through the mess that comes from their individual and collective traumas with a little help from their friends. (Primary tag is Complex-PTSD, also contains occasional silliness, canon-level violence, etc). Master version with proper formatting is on ao3, discussion on SufficientVelocity.

A story depicting what happened outside the Evas during the time of Two Souls; it outlines how Asuka/Shinji interactions changed under influence of Kyoko and Yui. It happens chronologically during chapters 8. and 9. of Two Souls.

"You break it, you pay for it." Well, he had definitely broken something, and as the puddle of crimson he was lying in grew larger, the corners of his vision beginning to grow dark, he supposed that this was how he was paying for it. [Post Rebuild 3.33] (Rewrite of Calborghete's Plan E, with his permission.)

During a test with the MAGI connected to a dummy Eva, the nano machine angel Iruel invaded NERV and began to overtake the lifeless bodies. It was smart, adaptable, but in the end defeated. What remained of its fight with the MAGI system incorporated itself into the empty Eva, and became its own sentient version of the titanic fighting machines. CANON DIVERGENCE/AU

A sequel to A Happy Accident. Shinji and Rei go to meet Asuka on her way to Tokyo-3, and they help her deal with her trauma after the Angel it defeated. [Lemon/Smut warning]

The timelines were shifted dramatically. Rei was born and not Shinji. My take on a fanfic I guess. Enjoy. Shinji X Rei Le epic update: MY BRAIN CAN’T THINK HALF THE TIME WTF

Some things can't go unsaid.

This time Gendo Ikari gets a chance to right his wrongs, sent back from the third impact inside the brain of the Shinji we all know and love from episode 1. With a great father like Gendo to lean on this can only lead to positive growth for our hero. Not to mention with his foresight of the angels the fights are gonna be easier than ever right?, RIGHT?

Mother's Day reminded me of this long post I made on /a/. I had to go to sleep and work before finishing it, so an anon missed the ending. While these are all originally 4chan posts, the story is taken seriously in a "lost episode" style between e9-19. It's all the shenanigans that happen when Asuka's stepmother comes to visit. I hope anon finds this, but anyone can enjoy!

A short look into One of Rei And Shinji's Dates

Lo que vio segundos después, al temblar el suelo bajo sus pies, desafió su cordura y juicio al poner en tela de duda su salud mental; aunque, no causándole ningún temor, sin entender de dónde venía, Shinji experimentó una sensación de confianza y seguridad ante la odisea que esperaba por él para comenzar. [One-shot]

After being abandoned, Shinji went through hell and back. However, as the Angels return, he is forced to face the demons he met so long ago, all the while being trapped as a mere pawn in a fight for the very soul of mankind. Rated T because it will get dark later on.

Misato reminds Shinji why he calls her mommy. [Smut, BDSM, femdom]

Misato tiene un problema que la aqueja desde hace años, ahora, llegando al límite que puede soportar, buscará ayuda en la única persona que cree adecuada para esto: Shinji Ikari.

Growing up in the shadow of the apocalypse, all Shinji Ikari ever wanted to do was reconnect with what little family he has left. On the cusp of his sixteenth birthday however, it would seem his father, and fate itself for that matter, have much more in mind for him.

Shinji was getting tired. The world had burned, but it hadn't. He had died but he was here. What would it take to break things enough to finally move on?

(Starts during episode 9) Shinji used to think he knew everything about Asuka. He thought she was just another stuck-up girl that thinks she knows everything. However, that changes when he sees who the real Asuka is one night.

Sometimes death isn't the end but way to start a new beginning

NGE x Castlevania: Desperate times call for desperate measures. Between the cults and the angels, demons have broken through into our reality. But where most see tragedy, Ritsuko sees opportunity, and with a new use for an ancient art, she may just develop the perfect weapon. Rated M for Adult Language, Content, and Themes.

In the Rebuild timeline, Asuka Shikinami Langley was chosen as the test Pilot for Unit 03's activation, leading to the events that unfolded. But what if Shinji was given the choice to become Unit 03's test Pilot? How much would this one choice change the entire timeline? Would he and everyone around him ever come to regret his choices?

[Set during REBUILD 3.0 1.0, SPOILERS for it and all REBUILD Movies] Shinji decides to confide Asuka something important he wanted to tell her from the moment they stopped at the village. And then, she decides to reveal something too, leading the two to finally deal with what both have left to each other ... and with what is left for them both to do in the New World ...

In his nightmares, Shinji sees a horrifying monster. He doesn't know it, but that creature is much more than a dream, and it's about to change his fate. (Fusion fic with Demon Lord Dante. Rated T for violence and a bit of language. AsukaXShinji in later chapters. Cover art done by borisd34)

Before he receives the letter that instructs him to go to Tokyo-3 to meet his father, young Shinji wished for someone to care about him and be kind to him. On that day, the wish was granted…and he encountered her. When she came with him, she brought a dark secret with her, one that was able to be either a blessing…or a curse, and her curse became her advantage.