An: The concept of Fairy tail and it's Characters belongs to Mashima Hiro and no one else. The plot is all mine thou.
Chapter 1: Run away
At the guild:
Natsu sat by his usual table and arm wrapped around Lisanna while laughing no one knew of what he had done the night before and it was better off that no one did so he could keep both his childhood love and the unruly bitch as his both of them. He looked up as Scorpio entered the guild wondering what was going o has the Celestial spirit went up to Mira and gave her a letter before sneering in Natsu's way and disappeared probably back to the spirit world.
Mira's PoV:
I took the letter from Lucy's Spirit and thanked him before I opened it. Reading its content I fell to the floor tears running in my eyes I didn't even notice master there or that he snatched the letter from me. My mind running tough on how and why this had happened to her. I barely Registered how master read the letter before he cleared his throat silencing the whole hall. "It seems one of my Children are missing due to the foolishness of a few of you." he said rage filling his voice before he turned to Natsu. "Natsu Dragneel you are hereby suspended from the guild for the Rape of Lucy," He said bringing gasps to everyone in the guild. Natsu sat quietly there before he opened his mouth and spoke "What proof is there except the words of a lying bitch?" Master glared at him but before he spoke up Loke and Virgo popped up in front of him both speaking at once "Princess is not a liar besides all her spirits are witnesses to your deed Dragneel." Virgo got quiet as Loke kept speaking. "Princess left the town thinking no one wanted her here anymore and if it weren't for her direct orders all of us spirits the king included would kill you for what you did to princess." Loke the turned to Makarov. "Master I will speak to her and see if she will come back in due time so please Remember the bright light of the moon and the stars that is Princess smile." Then they both popped away leaving the whole guild glaring at Natsu but before anyone could speak up Lisanna had slapped him. "Natsu you asked me to marry you yesterday since I was your mate then you did that!?" She sheeted tossing the necklace he had given her at him before she left the guild, A lighting hit him as Laxus stood up. "No rapist is welcome here so I suggest you leave now brat," HE stated the rest of the guild nodding with him. Erza cried silently before she spoke with hatred in her voice. "So you wanted us to stay away from her so she would be more open to you, is that it!? You used me and Grey in your plan to use our Lucy for your own selfish needs?" Grey was all quiet the floor and table freezing has tears left his eyes. "I lost her. I lost my dearest friend because of you Fire Brian,," He said quietly. Most of the girls just cried as Gajeel stood up beside Laxus. "Hey Laxus if we go now we might catch up to her scent." HE said as he left to walk out. Knowing Laxus followed him. Natsu felt a huge hand grab a hold of him as Makarov tossed him out, "I will get that bitch for this, she was supposed to be my toy with Lis as my mate!" Natsu sheeted as he sniffed the air to catch her scent following her,
With Lucy:
Lucy had walked for half a day when she stooped her feet sore and her will to go on wasn't there she was in the middle of the forest west of Magnolia as she sat down on the ground. Curling up with her knees to her face she cried again and didn't hear the person nearing her at all so when Natsu grabbed her by her neck it was a surprise to her. He held on to her as he clawed her panties away and pushed inside her strangling her as he trusted in and out growling "You can't run away from me bitch, I will find you and remind you just of who owns you." With the lack of oxygen Lucy blacked out but not before she saw something black move in to fight Natsu off.
Zeref hated what he saw his brother was doing to his so called friend and moved in knocking his brother out before he thought it trough properly. He looked down at the unconscious woman at the ground before him before he picked her up and teleported away entering a cave at his destination he put the woman down and wished she would find someone to heal the already appearing crack in her soul.
Later:
Lucy slowly came to remembering what happened she curled up crying more after an hour she decided to stand up and find a lake or something to clean herself up, she the noticed she was in a cave, thinking Natsu had taken her there she got up and ran away leaving her backpack behind wanting to get away from him, not knowing where she was she ran deeper and deeper into the mountains where she was until she slipped and fell down a rock hitting her head passing out again.