A/N: This chapter will be leading into a massive battle chapter and the climax. This chapter may seem confusing to some but I love it... my favorite chapter. *LOL* Enjoy! Please review.

Chapter 6

I dressed in my leather suit and pulled my hair up into a ponytail. I pulled my belt to my waist and placed the ninja stars and smoke bombs into my pouches. I also placed a vile of purple poison for my staff into my pouches. I zipped up my suit and grabbed my staff.

"Alex," Splinter said sternly to me as I left my room.

"I'm going out," I said to him. April and Casey came towards me.

"Are you going to find them alone?" She said.

"Don't anyone follow me, I have a lead on them, so no one follow me," I said to them. I looked over at the guys near the dojo door.

"Alex," Splinter said grabbing my arm.

I pulled my arm away and didn't say anything further to anyone. I walked to the door and left.

"We have to go after her," Casey said quickly picking up his guns and placing them in his belt holster. April shifted to Donnie's desk and grabbed my dad's journal.

"The location must be in here, I'll ride with you," She said. Vern looked to them and nodded.

Splinter turned to the guys.

"Well don't just stand there go after her," he said sternly to them.

Raph had already shifted out behind me, I didn't notice him move.

I ran down the street into an alley way, that's when I heard motorcycles rev.

I hide behind a building looking at the shadows on the ground.

"Great, I told them not to follow me," I said to myself. I pulled my mask over my face and half ran around the building to the other side of the street.

I shifted into a crack separating two buildings. I heard motorcycles whiz by and a black car.

I climbed up the metal stair case of one of the buildings so I could have a better view of the city, and to the rooftop.

I remembered being in a lab, so I assumed this lab would be underground or in an old abandoned building somewhere.

I ran on the rooftop and jumped the ledge to another building.

"She's on the buildings," Raph shouted to his brothers. They looked up and noticed me jumping the rooftops.

"She's crazy what if she falls," Mikey said swerving his bike towards my direction.

"She's going to have to come down over there," Donnie said pointing to the large gap between two buildings.

"I've got her," Raph shouted to them he turned his bike to the alley.

I stopped and noticed the buildings separated between a large alley.

"Great," I sighed and climbed down the stair case.

I jumped off the ladder and just as I turned I heard a motorbike swerve in to the alley.

"Go away," I shouted to Raph. He grunted and swerved the bike around me.

I ran down the alley to the street, he followed behind.

"I said go away," I shouted at him. The bike sped up near me, and he grabbed me.

"Hey," I said to him.

"Look we may argue and fight, and disagree on things…. But family doesn't turn its back on family, we're not letting you do this alone," he said pulling me to the seat.

He sped up and caught up with the others.

"Casey thinks he has an idea where the lab might be," Donnie said shifting near us.

"I meant what I said, I was going to do this alone until this idiot grabbed me," I said pointing to Raph. I pulled my hair from my face.

"Can you stop with that already," Raph said.

"Look, tell Casey to follow us, I know where the lab is," I said waving my hand to their car. Donnie nodded and sped his bike towards their car.

"Where Alex?" Raph asked.

"An old abandoned building I'm thinking near the docks, a big place…. Like a hanger," I shouted to him.

"LEO," he shouted to his brother. He slowed down and paced us. Mikey did the same.

"Follow me," he shouted to him and Mikey.

"What's the plan?" Mikey said to him.

"The docks, an old hanger there would be big enough for what Sachs is planning," I shouted trying to pull my hair from my face.

"Alright," Leo said swerving around us. He pulled over to Mikey's side and they tapped their fists together.

"HEY," I shouted back to him.

"We do things my way this time," I said to him. Leo looked to me.

"No, we roll like we always do," he half shouted swerving between the car and us.

"Listen Leo, the book says a resurrection of mutants, and an army," I said to him. He sped near us.

"I know ninja's better then any of you," I said again.

"… And?" Leo said pacing us.

"No, you're not shadow fighting them," Raph said tapping his fist to my head. I hit his hand off.

"No, just listen…." I started to say, then Casey pulled up near us.

He rolled down the window.

"We've got back up, Chief Vincent will send us back up when I give her the signal," Casey said to us.

I turned the handle of the bike swerving it to one side rolling us off it.

"WHAT THE HELL ALEX," Raph shouted as he grabbed me. Everyone else stopped.

"What the hell," Leo said jumping off his bike. I shook my head and pulled myself up off the ground.

"What's the big idea you could've gotten yourself killed," Vern said coming to our side.

"Listen all of you, we do this my way, Sachs is going to be very very angry, he'll be expecting us to show up…. Especially the guys," I said shifting to my feet.

"Well duh," Mikey said turning his bike off.

"I switched the mutagen before he managed to take it, he has mine and I…" I pulled out the real mutagen from one of my pouches.

"Have the real one," I said waving it.

"So that means, he'll try to use your mutagen on the animals, and when they don't change," Donnie said.

"He'll be looking to take yours," I said to him.

"He knows I'll be coming for the girls, and you'd be right behind," I said pushing the mutagen back into my pouch.

"He's planed this from the beginning, he's wanted an army of mutants and ninja's to do his dirty work, when he thought the girls weren't mutating he let them go, now he knows there's more of you, he's planning revenge," I said to them. I helped Raph pull the bike up.

"So what's the plan?" Casey said shifting towards me and Raph.

"We will need back up, but not yet, we'll have to be one step ahead of him," I said pulling my staff around my body.

"April do you have my dad's journal?" I asked coming towards the car.

"Yeah," she said and reached into the open window and pulled it out of her bag. She turned and handed it to me.

I opened it on the hood of the car and flipped through the pages.

"What are you looking for?"Mikey asked next to me.

"This," I said reaching the end of the book, there was a well in the back of the book that was covered by a thin sheet of paper.

I pulled at the edge of the paper and revealed the well.

"While I was in Okinawa and monk Miyatsu gave me this book, I noticed this well in the back." I pulled out the paper that was folded in there.

I opened it and placed it over the book.

"WOAH," Donnie said with a whistle.

"Oroku Saki," I said out loud, reading the Japanese characters next to the drawing of Shredder.

"My uncle, my father's brother, Oroku Saki…." I said again.

"Woah,woah wait," Leo said taking the paper from me.

"This guy, Oroku Saki is your uncle," he said surprised.

"That's why he knew everything about me, knows everything about you, he killed my father, planned the fire that killed April's dad…. And has always been one step ahead of us," I said to them.

"This is unreal, " Casey said also examining the paper.

"You mean to tell me, he planned everything, the original mutagen, working with Sachs, the fire at the lab," April asked leaning in towards us.

"Yes, everything was planned by him, he paid Sachs to create mutants for an army, when your father knew what they were doing, the lab was set on fire, he was planning on destroying everything so that no more mutants would be made," I said to April.

"And I saved them," she said pointing to herself.

"You mean he made us, and these girl turtles so we would work for him?" Raph asked his voice became husky.

"Exactly, and if I know my uncle as well as I think I do… his plan is mutant against mutant, he's going to set up a mortal kombat," I said shifting through the book again.

"Turn us all against each other," Leo said shaking his head.

"Not you, them against you," I said stopping the pages on drawings of the female turtles and male turtles.

"Your father knew about all of this? Why didn't he stop him?" Mikey asked rubbing his head, trying to make sense of this.

"He did try, he was going to kill his own brother at the dojo, but it was set on fire…" I said looking at them.

"So…. We can't fight them," Leo said.

"No, you can't, the girls can't fight… they'd have no advantage against you," I said again closing the book shut.

"But he'd force you too," I said to them.

Vern seemed agitated by all this, he half turned away, then back.

"So…. What your saying is he's going to get the guys to fight the girls and whomever wins," Vern said trying too to make sense of all this.

"Whoever wins fights him. And with his armor and upgrade, there's no way any of you will win," I said pointing to all of them.

"Oh man," Mikey said shifting away from us.

"So how do we beat him?" Leo asked looking at me.

"You get him to drop his guard, take off his armor, fight as a man," I said to them.

"Only then would you have the advantage," I said.

"And if he doesn't," Donnie replied.

"Leave that part to me," I suggested.

"No, you're not shadow fighting, the last time you did you nearly died," Raph hissed at me.

"Look we don't have time…. So don't argue with me, we have to get to the docks, before he attempts to do something to the girls …. I just hope were not too late," I said crossing my arms.

"ALEX," Leo shouted to me from his bike as we swerved down a long stretch of road towards the docks.

"YEAH?" I shouted back to him.

"I'm sorry for earlier, your right I was being a jerk…. I shouldn't have said what I said," he said pacing us.

"I'm not mad Leo," I said to him pulling my hair from my face.

"Let's finally put an end to this," he said to me. I smiled and nodded.

"Guys where here," Donnie said slowing down, he stopped his bike near the gates.

We all pulled in behind him and turned off the engines.

I shifted towards the fence and bent down looking towards the docks.

"What the heck is all that?" Casey said in a whisper, as equipment was being wheeled in to the large hanger.

Donnie pulled down his gear over his eyes.

"It looks like equipment, like large pods," he said scanning the area.

"You mean like the same pods Sachs trapped you guys in the first time?" April whispered to him.

"Bingo," Donnie said trying to scan the building.

"Alex was right, there's a huge army of ninja's inside the building, maybe fifty of them," Donnie said adjusting the lenses.

"We can't take on fifty of them," Raph half whispered.

"Wait," Donnie said again.

He pulled down his gear and looked to me.

"They have the girls strapped in those pods too," he said to me.

"Then we'll have to stop him," Leo said behind me.

"April, Casey, Vern… can you guys handle the guys near the hanger door?" I asked pointing to the two footclan men hovering near the hanger door.

"On it," Casey said loading his guns.

"We'll crash the party, through the roof," I said pointing to the top of the roof. It was made entirely out of glass.

"Yeah and kill yourself in the process, why can't you just do things the easy way," Raph huffed at me.

I was just about to turn to him and ring him out when we heard the sounds of guns from behind us.

"Uh oh," Mikey said looking behind us.

"Great," Leo said. We all held our hands up.

"Look what we found," one of the footclan members said.

"Hey," I shouted at the footclan member who was pushing me through the hanger door.

"Hey, don't be so rough man," Mikey said next to me.

"Welcome," Sachs said turning around.

I looked around, it was a large round dojo, with ninja's everywhere. The girls where in pods near the back of the hanger, and Sachs was hovering around computers with a scientist in a lab coat.

"MISS ALEX," Yuri and Mari both said. I looked to them. Good they were safe and unharmed, so far.

"What's going on Sachs," Leo said to him, he shook his arms releasing the grasp of the footclan men.

"Well let me tell you turtles," he said turning to the screens.

"Take the humans, lock them up, separate that one, I have something interesting for her," he said pointing to me.

Three men pulled April, Casey and Vern towards a large cell with metal bars.

"HEY," Casey shouted at them.

"Don't touch me," April shoved one of them away, he forcefully pushed her into the cell as the gate rolled down.

"Hey, leave them alone," I shouted to Sachs. My hands were tied up I couldn't fight the three men who grabbed me. They pulled me to an empty cell next to the other, and shoved me in.

"Hey," I shouted to them. The gate rolled down.

"Hurt any of them Sachs I swear," Raph threatened him.

"Don't worry they won't be harmed, they're here mostly for entertainment purposes." He said shaking his finger at us.

He turned around towards the guys.

"Untie them," he said to the footclan members. They took knives and cut the ropes binding their hands.

"Well… welcome," Sachs said again.

"Now that I have all my creations here, let me introduce you to….." Sachs said. A door opened in the back of the hanger and smoke filled the door.

"Shredder," he said. The ninja's filed themselves in lines.

"Woah that's Shredder," Mikey said as Shredder came through the smoke.

"New hardware," Raph taunted unimpressed. Donnie pulled down his gear.

"Guys, we have a problem," he said scanning the armor.

"That's Shredder but, he's half mutant," he said pulling his gear up.

"What do you mean half mutant," Leo hissed at his brother.

"Smart turtle," Sachs said as Shredder came towards him.

"Yes, he is half mutant, the mutagen we found in the envelope, combined with the purple mutagen, created an ultimate Shredder," he said pulling the cape off Shredders shoulders.

"What the hell…" Casey and Vern both said looking through the bars.

Sachs snapped his fingers and may ninja's and footclan men surrounded the guys.

"HEY, HEY LEAVE THEM ALONE," I shouted at them trying to get their attention.

The guys tried to fight them off but they were overpowered and pulled into four pods.

"Hey, let them go," April shouted through the bars. They tried to shake the bars and lift them.

"Hey let us out of here," Raph shouted trying to break the glass.

"Not yet," Shredder said. He pulled off his helmet revealing himself.

"Oroku Saki," I said surprised.

"Alexandria Tomaki," he said looking to me.

"Why have you done this, trying to build an army of… mutants," I said to him shaking the bars.

"Well I did build an army, unfortunately your turtles where released before I could capture them and raise them myself…. They would've made great warriors," he said taking a step towards me.

"Don't come near her," Leo shouted at him from the pod.

Shredder snapped his head towards him.

"You remember Bebop and Rockysteady," he said pointing to the two mutants hiding behind the ninjas.

"They're…. ugly," I shouted at them.

"Wooah, who yeah calling ugly doll," Bebop said banging his fists against the bars of my cell.

"Easy boys, you'll get your chance," Sachs said to them. Bebop and Rocksteady jumped around the computers and the ninjas. They cheered for them.

"See Alex, we have a little problem," Shredder said pacing near my cell.

"The mutagen that was in the envelope, wasn't the real mutagen," he said turning around to Sachs.

"I tried to get it out of your female friends there," Sachs said pointing to the girls.

"But they wouldn't talk," he said again.

"So I have this feeling…" he said coming towards Shredder.

"…That someone in this room, has the vile of green mutagen," he said looking around to all of us.

"Why do you want it for?" I asked again shaking the bars.

"Because if you combine the purple mutagen with the green one," Sachs said looking to me.

"You get the most powerful, ultimate being alive," he said pulling his hand through the bars at me. I moved away.

"A mutant that's half human and half mutant," Donnie said from the pod.

"That's sick man, why would you want to create a mutant like that," Mikey said to him trying to shake the pod.

"He's not trying to create a mutant Mikey, he wants to become one…. An ultimate warrior," I said to him.

"Alex, dear niece…" Shredder said to me pulling his hand through the bar, he grabbed my face.

"Where is the mutagen?" he said I forcefully pulled my face away from him.

"I know what will make her talk," Sachs said with a smirk.

"Bebop, Rocksteady…. Have your pick," Sachs said guestering to the guys.

"Ho ho ho," Rocksteady said as he tapped his fists against the pods.

"Eenie, meenie, Minny," Bebop said as they circled the pods.

"Mo," Rocksteady said tapping against Mikey's pod.

"Hey, hey, not Mikey," I shouted through the bars to them.

Mikey's pod opened.

"Hey, hey," Raph shouted shaking the pod again. Leo and Donnie both tried to break the glass of their pods trying to ram into them.

"Whoo, hoo…" Bebop said.

"He's unarmed, this isn't a fair fight," April shouted to them.

"Leave him alone," Casey shouted too.

"I can take them," Mikey said stretching his arms. He held his fists up to them.

"HEY SHREDDER," I said smashing my staff against the bars to get his attention.

Everyone stopped and looked to me.

"NOT MIKEY," I shouted at him.

"Take him boys," Shredder said to the two mutants. Both the mutants started circling Mikey throwing punches and attacks at them.

Mikey would block them and attack in return.

"GET THEM MIKEY," Raph would shout to him.

"Uhhh, whip out," Mikey said as Bebop knocked him down.

"Hahaha, a weak turtle," Rocksteady said, looking down at him.

"SHREDDER," I shouted waving the vile in the air.

"Leave Mikey alone and I'll give you the vile," I said to him. Sachs waved his hand to Bebop and Rocksteady.

"Good girl, I knew you would, but why defend a turtle," Shredder said looking to Mikey then me.

"You wouldn't understand my reasons," I said to him. Then the bar to my cell lifted up.

"Kill him," Shredder said to the ninjas.

"NOOO," I shouted running to Mikey I held my staff up blocking a sword from one of the ninja's.

"LEAVE HIM ALONE," I shouted at the ninja, I twisted my staff knocking the blade to the ground.

"You want the vile Shredder you let him go," I said knocking down the ninja that tied to attack Mikey.

"ALEX, MIKEY," Leo shouted to us.

"Put him back in the pod," Sachs said to the ninjas, three of them took Mikey and locked him up again.

"The vile," Shredder said extending his hand to me.

"So, all you need is this mutagen to make yourself a supreme being?" I said holding it up in my hand. He quickly swung his hand at it, I clasped my hand shut and threw it to the ground smashing it before he could take it from me.

"Yeah," I heard everyone say.

"Hehehehe," Shredder laughed at me. He then lifted his hand to me and slapped me.

'HEY," I heard everyone shout.

"Stupid girl," Shredder said to me. I touched my cheek and turned my face to him.

"You are going to regret your decision," he said to me.

Sachs opened the pods releasing the guys and the girls.

Leo ran to me.

"Are you okay?"He said touching my shoulders.

"Yeah," I said noticing my scar was bleeding.

"You monster," Raph shouted at Shredder charging at him. Shredder held his arms up to Raph as he threw punches at him.

Donnie grunted and ran at Shredder too. He laughed and threw them both to the ground.

"ENOUGH," he said as blades on his armor retracted.

"Give them their weapons," Sachs said to the ninja's they threw them their weapons.

"Now, fight eachother," Shredder said pointing to the girls. Some ninja's threw them some weapons too.

"No, they can't fight," I shouted at him.

"We will not fight them," Yuri said looking at the katana's that were given to her.

"We have an unfair advantage," Mari said holding a bo in her hands. She looked at it then back to me.

I looked at her and shook my head.

She hissed under her breath and ran at Shredder lifting her bo to the air.

"MARI," Aki and Nina shouted at her.

"MARI, NO," I shouted at her, I was about to run to her and pull her back when, she swung the bo and smashed it down against Shredders armor smashing his left shoulder blades.

"IMPUDENT MUTANT," he shouted he elbowed her in the stomach knocking her to the ground.

"NOOOO…." I shouted at him. Leo grabbed me by the waist and pulled me towards him so I wouldn't attack Shredder.

"Let go," I said to Leo.

"Mari," Aki and Nina came to their sister's side.

"No more of this," Shredder said, he lifted his arms and blades retracted.

"GET DOWN!" Donnie shouted to everyone as blades flew out of his armor in every direction.

Sachs pulled himself up from under the desk.

"Take it easy with those," he said to Shredder.

"Let's make this interesting shall we Oroku Saki?" he said to Shredder.

"You want their mutagen; they apparently aren't willing to give it, then how about…" Sachs said looking around to all the ninjas.

"How about I take it forcefully," he said as the blades reseeded back into his armor.

"Now I'm pissed off," I said picking myself up off the ground, I looked at my arm. His blades managed to cut through my leather and cut my arm. Raph put a hand over my wound.

"Are you okay?" he said pulling me up.

I reached into my pouch and pulled out my poison dipped stars.

"NO," I shouted and threw the stars at Bebop and Rocksteady. The four ninja stars hit them.

"Hey," Bebop shouted, as he attempted to pull one of the stars out of his chest.

"What is this?" Rocksteady said, in an instant both of them fell to the ground.

Sachs ran to them and checked for their pulse.

"What have you done?" he said looking over at me.

"I have one for you to Sachs," I shouted at him. I pulled my arm away from Raph's grasp, and ran at Sachs. I threw two stars at him hitting him in the back.

Shredder noticed my moves and jumped at me pinning me to the ground. I lifted my staff and held it against him.

"You've crossed the line Alex," he said pressing his harm blades against my staff.

"No, you have…" I said pushing my staff against his arm.

"GET OFF," Raph shouted twirling his sais he jumped over Shredder and pulled him off of me.