AN: Hello again everyone, thanks for all the reviews and what not. So I would like to thank The Worm In the Apple for pointing out the fact that Simon can't enter the institute in the first chapter. Sorry about that everyone I completely forgot about that when I wrote that part! Just gloss over that fact since I can't seem to think of a way to fix it! Well here is chapter two!

EDITED AGAIN December 5, 2014.

Chapter Two: Silent screams

-Flash back

Clary was breathing hard as she swung back and kicked, she missed Sebastian's chest and knocked over the table next to him instead as he darted at her knocking her to the ground with him landing on top of her. They had been fighting for a good five minutes at this point; Clary was getting a little tired while Sebastian looked like he was just getting started. His body was heavy on top of hers and she tried to fight him off but he had a firm grip on her.

"You're so beautiful Clary." He said as one of his hands pinned her arms above her head and his other hand started trailing down to the button of her jeans.

"You belong to me." He said looking into her eyes and unclasping her jeans. She kicked out of his grip at that point and started to try and crawl away, but he was quicker and he lunged at her landing on her back sending her flat on her stomach with him lying on top of her.

"Why try and fight the inevitable Clary? You know you want this as much as I do." He whispered into her ear sending chills down her spin.

"I HATE you." She hissed back at him.

"No you don't." He said back with a small laugh as he brought his stele down upon her arm. He started placing a rune on her upper arm, she tried to fight him but he had her pinned.

"What are you-"She tired asking as she suddenly felt weak, tired and numb. Sebastian let some of his weigh off her and she tried to roll over onto her back but she found herself too weak to move.

"What did you do to me?" She whispered as he flipped her over so she was on her back and he was hovering over her looking down at her.

"It was a simple medical rune, used to help shadow hunter's bodies relax so their injuries can be treated." Clary closed her eyes as she felt tears slip down her cheeks as he let his hand slide down her body as he started working on her jeans again. He started sliding her jeans down her legs and she started trying to fight him off again but she found that her arms would barely lift an inch off the ground.

"Look at me." Sebastian demanded, she refused so he pulled a dagger out of his pocket and placed it at her throat.

"I don't want to use this Clary but I will if you make me." She finally looked him in the eyes and he looked murderous. She weakly nodded; he placed the dagger back where it came from and he pulled her jeans the rest of the way down her legs. She felt naked and exposed and there was nothing she could do about it. Clary felt the rune on her arm give a small pulse and she was suddenly overwhelmed with dizziness and she was afraid she was going to black out. She became aware of herself again just as Sebastian lifted her shirt up and over her head. A sob escaped her lips but he didn't seem to notice, or care.

"Sorry sister but we don't have a lot of time right now, can't be late to the ceremony so sorry if this is rushed, I promise you will enjoy it more later." He grinned down at her as his hands roamed over her stomach touching her all over.

"You don't have to do this Sebastian… Jonathan please!" She begged in a weak whisper.

"I don't have to Clary, I want to." She saw an evil glint in his eyes and knew that this was going to happen; nothing she could say or do would stop him. Another sob escaped her lips as he roughly yanked down her underwear and slipped on of his fingers into her opening. It hurt and she shuttered a little as a small scream came out, he backed handed her into silence.

"You're tighter than I expected." He said as he added another finger trying to stretch her.

"Jace must not be that big then." He said with a laugh looking at her face.

"I wouldn't know." She whispered back. His face held a moment of shock before he smiled wickedly.

"You and Jace haven't fucked?" He asked crudely.

"I assumed with the sexy scratched on my back the other night you guys were hitting the sheets." He said as he started kissing her neck.

"This is going to be amazing." He whispered at her throat as he started sucking on her neck, leaving a mark for sure.

She started struggling again as he withdrew his fingers and started working on taking off his own jeans. Suddenly she felt his hardness on her stomach. If felt large and very warm.

"Clary you will always be mine." He remarked not even noticing her weak attempts at fighting him off. He slowly parted her legs and lined himself up at her entrance. She shuttered with nerves.

"You're so beautiful sister, I feel lucky to be your first." He said as he slowly started entering her. She cried out in pain but that didn't stop him. He filled her until he was all the way inside her.

"Oh, you're so tight and warm." He let out a throaty moan before he took himself half way out and then jammed himself back inside. Clary was crying and withering in pain, this was nothing like she ever felt before. The rune on her arm made her weak and made her feel so helpless. Sebastian pushed her bra up slightly and started sucking on her previously ignored breasts.

Clary tried to think about other things, Jace's smile, Simons laugh and even Isabelle's gross cooking. Anything to keep her mind from thinking about what was happening to her. The pain was getting unbearable and all her happy thoughts slipped away and the only thing left was Sebastian and his relentless pounding. She couldn't help the moan of pain that slipped out of her mouth.

"Look at me Clary, I am going to come inside you and I want you to look at me as I officially mark you as mind forever." Clary shut her eyes tight not wanting to give him the satisfaction, but he started pinching her left nipple so hard it felt like he was going to pull it off. Her eyes opened on their own accords. He thrust inside her three more times before she felt him shutter with his orgasm. He yelled out in pure bliss not taking his eyes off Clary for even a moment the whole time. They were both breathing heavily when it was over. He laid his head on her chest.

"That was amazing sister." He whispered as he started to play with one of her curls.

'Why does he have to keep calling me sister?' She thought to herself as he thrust himself once more inside her and he shook with an aftermath orgasm. He sat up slowly and looked her in the eyes.

"You are mine Clarissa, never forget that." She cried out as he slowly pulled himself out of her.

-End flashback

She shook slightly as the small amount of toast she had eaten for breakfast came rushing from her stomach. She heaved for a few minutes until there was nothing left. She sat curled at the bottom of the tub for ten more minutes before she trusted herself to stand. After quickly washing her hair she exited the tub. She quickly dressed in some gray comfy pants and the top she had borrowed from Jace that morning.

AN: Hope you liked it! I don't get a chance to write on the computer as much as I would like, so I've been handing writing this story and I already have chapter 3 done and half of 4. The next chapter will be up the next time I can type on the computer. Monday or Tuesday I am guessing.