Chapter 6

Clary looked at Isabelle, and in turn Isabelle looked back at her. They just stared at each other until Isabella slowly, with a lot of caution leaned towards Clary and pulled her into a hug when the other girl didn't protest. Clary was shocked, Isabelle was hugging her? Not lashing out and kicking her out of the institute. After a moment Clary returned the hug and cried into the taller girls shoulder. They stayed like that for almost an hour; until Clary finally stopped sobbing did Isabelle finally pull away.

"Clary you have to tell Jace, you can't keep this in any longer!" The dark haired girl said and Clary shook her head.

"I can't he'll hate me." Clary whispered while Isabelle shook her head this time.

"No he won't, I promise Clary. He's going to kill Sebastian." Isabelle could never call him Jonathan, and Clary was slightly glad she always thought of him as Jonathan so she always flinched when she heard his name. Clary tried to keep a sob from exiting her mouth at the thought of telling Jace. At that moment Alec hesitantly walked into the room and looked around at the wrecked room in shock. Then he looked down at the girls on the floor both looking like they had been crying.

"What happened?" Alec asked as Isabelle let out a sigh and looked down at Clary raising her eyebrow slightly, asking if she could or should tell Alec. Clary let out a tiny sigh herself and stood up.

"I am-"Clary started running a shaky hand threw her messy hair.

"I am gonna go to the bathroom and clean up, while you tell him." Clary said not looking either one in the eye while she kicked books and other knick-knacks out of her way so she could get into the bathroom. Once the door was shut Isabelle took Alec's hand and started crying a little.

"I am so outta my league on this one Alec." Alec looked at his sister in shock; she was the bravest person he knew. He was nervous to hear what had happened.

"Jonathan raped Clary the night that we save Jace." She whispered the words but Alec heard them perfectly clear. He felt like his world shifted slightly and he had to sit on the bed or he felt like he would collapse.

"How could someone do that?" Alec looked at the bathroom door and felt his heartbreak for the girl inside. He wasn't the biggest fan of Clary Fray but he would never wish that upon anyone.

"Where's Jace? What happened tonight, does he know?" Alec shot a bunch of questions at Isabelle trying to get the sick feeling to leave his stomach and get his mind set into shadow hunter.

"No Jace doesn't know what happened, I don't know everything that happened tonight Jace left after Clary had her break down and I haven't had a chance to ask her." Isabelle avoided the one question she didn't want to answer, she was pretty sure Jace said he was going to Magnus's at some point her brother wasn't going to be happy.

"Okay so where is he so I can find out what we're going to do to kill that bastered." Alec asked ready to start planning.

"Um I think he's… at Magnus's." Isabelle said waiting for the backlash she was expecting from her older brother, but he just stood there dumb founded.

"Why is he there? Magnus's asked us not to bug him with our problems anymore." Alec said winching as he said his name. Clary came out of the bathroom at this point, looking a little better. She had brushed her hair and washed her face of all the tears.

"I was with Magnus's tonight when I got a call from Jace or who I thought was Jace asking me to meet him somewhere. Since it was so late after I left Magnus thought it was fishy and called Jace. They figured out it wasn't really Jace who called me and they both came and saved me from Jonathan's warlock. They captured the warlock and Magnus's brought him back to his place for questioning, I think there both there." Clary said barely looking at either of them, they both knew her secret now and it made her heart nearly race out of her chest.

"Okay let's go to Magnus's." Alec finally said his voice cracking a little at the end.

"Are you sure?" Isabelle said looking at him with pain in her eyes.

"Yes, this is more important then me and my broken heart." He said looking at Clary, she looked away from him feeling tears in her eyes, Alec had never been so nice to her before, or cared.

"Let's get our gear on and head over there." Alec said to his sister and they headed off towards their rooms promising to meet at the elevators in ten minutes. Clary was alone for the first time and looked at the clock she had thrown on the floor but it didn't get unplugged from the wall; it said it was four in the morning. She couldn't believe how much time had passed since she had been at Magnus's. Clary didn't want to wear any gear so she just changed her shirt to one of her own long sleeved ones since she had still been wearing Jace's. She pulled her hair in a ponytail and retied the laces on her boots. She sighed and suddenly felt her phone vibrate in her pocket; she pulled it out and saw that it was Jace calling her. She hesitated answering it, but in the end she picked it up. Magnus had taken the warlock hostage, he couldn't be calling her.

"Hello?" Clary said her voice sounding sad, and alone.

"Hello darling sister." Clary cringed as she heard Jonathan's voice on the other end, apparently the warlock left the trick phone with him.

"Don't hang up, I promise you won't like the outcome if you do." Jonathan said right as Clary had thought about doing just that.

"What do you want?" She spat into the phone and glanced at the clock on the floor again, it was almost time to meet Alec and Isabelle.

"Clary what have I always wanted? You of course." He stated like she was dumb, she shivered a little and closed her eyes tight.

"Clary I know that they have my warlock Patrick, I am not as stupid as you think I am. This is all part of my plan. He was supposed to be captured, and Jace was supposed to leave you and Isabelle and Alec were supposed to leave you all alone. This is all coming out perfectly." He laughed into the phone.

"At this very moment I have two shadow hunters taking out Isabelle and Alec so they won't be a problem. After they are down my guys will be bringing you to me. "Clary tried to swallow the lump in her throat, this wasn't happening right?

"Please don't kill them." She begged into the phone hating that even she could hear the fear in her voice.

"I won't kill them Clary, as long as you do everything that I tell you." She nodded at the phone stupidly, and then remembered he couldn't see her.

"Fine." She spat and silently grabbed a small dagger she spotted on the floor and shoved it into her back pocket. Suddenly she heard a noise and looked up to see Alec stumble into the room, fighting with another shadow hunter.

"Clary gets out of here!" Alec screamed at her, Clary's eyes went wide and she started to rush to the door when Jonathan's voice stopped her, she forgot she was on the phone with him for a moment.

"If you take one step out of that room I promise I will have him kill Alec right this second." Clary stopped in the door frame and looked back at Alec and the unknown shadow hunter fighting. Alec was putting up one hell of a fight and she thought he might win when the unknown name hit him in the gut knocking him backwards. Then he started kicked Alec in the stomach until blood started coming out of his mouth and Clary found herself screaming and pleading for him to stop. Suddenly the man stopped and looked at Clary.

"Don't worry, he isn't dead." The man said and lunged at her pulling her into him and pulling a cloth over her face. She was out in under a second and he was out of the room with her seconds after that. Alec was left on the floor bleeding and half dead.

Jace looked at the time one his phone; it said it was after five in the morning, he wondered when Isabelle or Clary was going to call him. The warlock was still out and the only usefully piece of information in the man's coat was the blueprints of the hide out. Jace sighed starting to get bored, he laid awkwardly on Magnus's mini couch wishing it were longer. Jace finally heard the chirp of his phone and looked down to see it was Isabelle.

"Hey, what's going on is Clary okay?" Jace said as he picked up the phone and sat up on the couch.

"You are so predictable you stupid boy." Jonathan said into the phone and Jace found himself shooting up off the couch.

"Jonathan, what have you done to my sister?" jace hissed into the phone and started walking into Magnus's room so the man could hear what was being said.

"She's fine, I am not so sure about Alec he put up a really big fight." Jace could hear Jonathan laugh a little.

"But I am sure if you rush over to the institute now, which I am sure you will, I think he can be saved." Jonathan continued as Jace gestured to Magnus and put the phone on speaker.

"I just wanted to let you know how stupid you were to ever let Clary out of you sight, you very stupid predictable boy. I promise she's in great hands, I can't wait to taste her again." Jonathan almost groaned into the phone just thinking about how amazing Clary tasted.

"You better not hurt her you bastered I promise I will find you and fucking kill you!" Jace said angrily into the phone, and the only response he got was laughing.

"I already have her Jace, and by time you get back to the institute we will be very far away I promise you that." The phone click and Jace nearly threw his phone across the room.

"FUCK!" He screamed at the top of his lugs, how could he be so stupid as to think it would be that easy to have saved Clary from that warlock. Magnus just looked a little confused he had only heard part of the conversation.

"We need to get to the institute; they attack Alec, Isabelle and Clary. They have Clary and apparently Alec is really hurt. They both started rushing out of the room, only for Magnus to stop and put a very powerful spell on his apartment. One that wouldn't let anyone in, or out he wasn't going to let the one thing that might have information get away. Jace ran up the stairs with Magnus following close behind. They didn't say anything to each other as they climbed onto the demon bike and speed away. All Jace could think about was how he failed Clary and couldn't keep his promise, and how stupid he was to fall right into Jonathan's plan like an idiot. All Magnus could think about was Alec and hoping he was alright, he hadn't seen him in over a month and he didn't want to see him almost dead after so long of not seeing him.

Jonathan smirked as one of his many servants entered with Clary slung over his back. Finally his plan worked. He took Clary from the man's arms and ushered him away, pleased with his work but wanting him to go away so he could enjoy his prize. He walked down the hall towards his room, opening the door and laying his Clary on the middle of his bed. She looked great lying there, so very beautiful. He sighed to himself and could feel his cock grow a little as she let out a small sigh. He wished she would wake up so he could taste her again; it wasn't fun if she wasn't awake. He thought he wouldn't put the medical rune on her this time, thinking it might be more fun to let her fight. He smirked and he grew even harder just thinking about it. He slowly touched Clary's shoulder, then down her arm and all the way down to her feet. He pulled her boots off and chucked them across the room. He place his hand onto her stomach this time and couldn't help it when his other hand started touching his growing erection as she squirmed on the bed a little causing a moaning to escape from his mouth.

Jonathan laid down next to her and started kissing on her necking, wanting her to wake up before he came in his pants just touching her. She started squirming again and he knew she was going to be awake soon. He pressed his hardness into her side and moaned as he tangled his hand into her hair. He shuttered at finally having his obsession and he couldn't wait to do everything he had been dreaming about. And finally taking control of the shadow hunter world. He felt Clary twitch a little then stretch as she woke and found herself staring straight into Jonathan's eyes.

"Morning little sister, I am glad your finally awake." Jonathan spoke as he pressed his cock into her side again. Clary stiffened and her eyes widened.

"No, get away from me." She screeched as she tried scrambling away. He grabbed her wrist tightly and pulled her closer.

"I like it when you fight dirty with me." He said as he laid on top of her pinning her wrists above her head.

AN: UM, two updates in one day? I am awesome! Haha seriously I am so over my writers block! If I didn't have work in an hour and a half and if I didn't have to clean up the house then this chapter would be even longer! But alas I have about 3 hours of stuff I have to do that I have to somehow cram into one and one and half! Maybe an update tomorrow, we'll see.