Every face of the Doctor went through the Team Rocket grunt's head. He saw the Doctor take on so many enemies. The Zygons, the Sontarans, the Daleks, the Cybermen, and so much more. Then finally, he saw the Doctor destroy his own home planet, Gallifrey.
"Y-you're a Time Lord!" said the grunt. "You're from the planet Gallifrey, in another universe! You are the most dangerous man in your reality!
"Yes, I know I am, and that is why you have to tell me WHAT IS GOING ON!"
"Um, what's happening?" asked Misty.
"Nothing." replied the Doctor. "My head hurts too much to show you, now. But long story short, I'm an alien, and I have to save everybody." He turned to the Team Rocket grunt. "So," he said. "what's happening?"
"Okay," said the grunt. "back at Team Rocket headquarters, they are doing cloning experiments to fuse pokemon DNA, and create super pokemon. However, there is one clone that will not be fused, just genetically strengthened."
"What's this pokemon called?" asked the Doctor.
"It's name is Project Mewtwo, cloned from the cells of Mew, the rarest pokemon in existence. The boss needs the master ball to contain it, and enslave it."
"Enslave it?!" Ash exclaimed.
"Pokemon may be used in battle, but never enslaved. Even if it is a clone." Misty said.
"Okay." the Doctor said. "That's very valuable information. Now tell me, where are Team Rocket's headquarters?"
"If you let me go, I'll tell you." said the grunt.
The Doctor hesitated, then took off the caterpie web.
"Okay." said the grunt. "This way."