Naruto lay on the ground, clutching his bleeding chest with his right hand as he held his left arm out to Danzo who was currently coming closer. "Go, Naraka Path."

The King of Hell's head then popped out of the ground surrounded by black flames. It opened its mouth and an arm-like part of its mouth grabbed Danzo's tongue.

Naruto felt grossed out. "Eww… This is one of the creepiest things I've ever seen…"

The King of Hell then said, "I am the King of Hell. By the power of the Naraka Path, you will answer the Rinnegan user's question truthfully, or I shall devour you."

Naruto staggered before removing his hand from his chest wound to see that the blood was dry. "Ok then, Danzo. Did you do anything to my family before my parents were expecting me and my sister? If so, what are the full details of it?"

Danzo chuckled. "Clever boy. Now I have to tell you. Very well. My first action against your family was in the third ninja war. It was nine months after Dan had died and Tsunade had just given birth to their child. How she could be a mother and fight the war? So, I took the child from his hospital bed and gave it to Dan's cousin in the Namikaze clan who knew nothing of where the child came from. I had the doctors tell Tsunade that her baby was stillborn. That child grew up to be your father, making you Tsunade's grandson and a Senju clan member."

The King of Hell said, "This is true." It then let go of Danzo's tongue and disappeared.

Naruto smirked. "You know, with luck! Tsunade heard that and is on her way here to help me kill you."

Danzo's eyes – even the ones in his arm – widened. "The worst part is that you have a 90% chance of being right about that with your luck."

Naruto threw down a smoke bomb and vanished behind it.

Naruto stood behind a building, quickly closed his eyes and made a Shadow Clone.

The clone ran back out to battle Danzo while the real one bit his thumb to do the Summoning jutsu hand signs.

Danzo turned around, held out his hand and released a vacuum blast of wind chakra, only for the clone to go poof.

The real one then stepped out with Gamatatsu and Gamakichi on his shoulders.

Naruto blew out his own wind chakra blast as Gamatatsu spat out oil and his brother spat out flames. All three blasts fused together into one giant stream of blazing oil that hit Danzo dead on.

The two toad brothers then dispelled themselves to go back home as Naruto turned around and jumped back just in time to avoid a strike form Danzo's Wind Release sword.

Naruto smirked. "You only have nine Sharingan left, Danzo."

Danzo growled as he summoned another tree below him to take him to the top of the Hokage Tower.

Meanwhile, in the village below…

Tsunade had truly overhead Danzo's words and was on her way, knocking out his root ANBU like they were nothing in her rampage to kill Danzo for taking her baby away from her.

At the same time, Sakura was hiding as the other rookies and Team Gai handled the Root ninja problem as she said to herself. "The Fourth's son, the Fifth's grandson, the last heir to Uzushiogakure and he has the Rinnegan. Why did I say no to him every time he asked me out?"

Lee looked at Sakura with shock as he kicked away a Root shinobi. "Sakura, all of that has nothing to do with who Naruto is. He is himself, always has been always will be. If you show interest for any of those things, you would be nothing more than a gold digger."

Then it hit Lee. Sakura had only asked out Sasuke so many times because of his name and, now that Naruto had found two more last names, she wanted him. Sakura was a gold digger and, like Naruto before him, he had been too blinded by her cuteness realize it. He growled as he focused more on Danzo's shinobi.

While all of this was going on, in another world, a woman named Misato was kicking a purple demon's head, saying, "GIVE HIM BACK, YOU MONSTER! GIVE SHINJI BACK, RIGHT NOW!"

Eva-01 remained locked in its restraints, unmoving and unchanging while, within its mind, Yui thought, "Now I know who cares about my son the most. I can use that in my plan to stop Gendo."

The ghostly woman then did her husbands interlocked finger pose as she thought, "She is acceptable."

Speaking of the Third child, he had just regained consciousness in the forest with five Dead Root ANBU around him.

He quickly jumped to his feet, slightly freaked, " Ok, so it wasn't a dream. I'm in a different world where everyone can use the A.T Field – which is called chakra here – to do superhuman things. I was sent here by my mother who's trapped in the Evangelion, and I have an evil demon living in my head."

Yin Kurama then added, "You forgot killing these Root bastards, the ninja civil war has broken out thanks to their leader's coup d'état and having someone else's memories in your head that lets you use the jutsu they know at a way lower level."

Shinji then replied aloud by yelling, "I DIDN'T FORGET! I CHOSE NOT TO LIST THEM!"

The fox them then respond by calling Shinji a pussy.

Shinji just rolled his eyes as he walked away from the smell of the dead bodies around him. He didn't know where he was going, but anywhere had to be better than here, or, at least, that's what he thought.

Meanwhile, on top of the Hokage Tower…

Danzo was standing on top of the tower overlooking the war just as Naruto just made it to the roof. "Ok, Danzo. This ends now."

Yang Kurama then warned Naruto, "Kit, you have used a lot of chakra in this fight. I know I'm giving you more as you need it since you have my father's eyes, but still you're 12. Your body can't handle this much power. You need to be smart for once and either finish this off quickly or get him somewhere where you can have help."

Danzo smirked. "Boy, your courage is limitless, but your body's ability to handle the power you hold is not. Sooner or later, your body will burn out and you will die. I simply just have to outlast you and, seeing as I have ten more lives, that is an easy task. You have already lost, boy."

Naruto make his right arm glow. "Funny. That's what Neji said before I beat him."

Naruto held his glowing arm out towards Danzo as it transformed into a missile launcher that was loaded. "Asura Path: Rocket Launcher." The missile then fired as the parts of its launcher fell off Naruto's arm.

Danzo didn't move as the missile blew him up, only for him to reappear behind Naruto with only seven Sharingan left in his arm. "Like I said, being able to cheat death is a win."

Naruto turned to see Danzo coming out him with his wind sword, but Naruto stated, "Preta Path: Rasengan Dome."

A giant Rasengan then formed around Naruto, not only blocking Danzo's strike but also ripping the old man to shreds and sending his blood and guts everywhere.

Naruto dropped the dome and turned around to see Danzo reappearing five feet away from him with only six Sharingan left in his arm.

Danzo saw Naruto beginning to pant. "I will admit that outlasting you won't be as easy as I thought, seeing as I now only have six Sharingan left, but you are already starting to give out."

Naruto panted as he formed the Shadow Clone hand sign and said, "True, but I don't care if it overloads my senses. Multi Shadow Clone jutsu."

200 clones of Naruto then appeared but Naruto fainted as his first five clones dispelled, only leaving 195 clones.

The clones charged at Danzo only for him to begin cutting them down. "I see only you and your first five clones can use the Rinnegan because you share their senses. To see out of six sets of eyes is very useful data to have when I get those eyes for myself."

One of the clones was able to stab Danzo in the back of the neck, making Danzo fade away only to fade back into existence behind the clone with only five Sharingan left in his arm.

Danzo cut the clone in half as he said, "This is five times that you've killed me. Such power is wasted on you!"

Danzo began to cut through the clones once more just for the last one to stab him in the Sharingan he held in his right eye, sense he could not see through the Sharingan in his arm. This robbed him of the eye's genjutsu ability to copy jutsu, the ability to see what your opponent would do next and half his eyesight.

The clone then dispelled and the rush of his clone's memories forced Naruto back awake.

An enraged Danzo growled as he watched Naruto stumble back to his feet with a smug smirk on his face. "This ends now boy."

Danzo did some hand signs as he said, "Wood Release: Wood Dragon."

The tree Danzo used to get up to the top of the building then transformed into a dragon and raced at Naruto who could barely stand.

Naruto quickly did the summoning jutsu hand signs and spoke, "Animal Path: Summoning jutsu." Yang Kurama then appeared and slashed through the wooden dragon with its claws which, as luck would have it, also cut off Danzo's Sharingan arm, removing his ability to cheat death.

The fox then vanished as Naruto fell down to the ground, face first.

Danzo soon followed and collapsed from pain as he held the bleeding stub that was once his arm.

Naruto then said, "Your root ninja are losing Danzo. You no longer have the Sharingan. You will die from blood loss. It's over. You lose."

Naruto heard Danzo cursing as he blacked out.

Meanwhile…

Shinji found himself in the village as the last of the Root ninja where captured and found himself losing consciousness, just for the medical Shinobi to find him and rush him to the hospital.

Things in Leaf Village would never be the same again. For some, it would be worse. For others, it would be better. Danzo's evil was over, but this was just the beginning.

Naruto awoke in a hospital bed hours later, bandaged from head to toe with Tsunade standing over him, crying.

He spoke weakly. "What's wrong, Grandma?"

Tsunade pulled the boy in to a hug and cried. "The doctors did a DNA test. You are my grandson. I thought that I had no family left and I thought that I was going to lose you, too. That's what's wrong, brat."

Once Naruto was released from his grandmother's hug – something that he never would happen – he asked, "How's the village? Did you find the Shinji? He's the Jinchūriki of Kurama's evil half."

Tsunade wiped the tears from her eyes. "The village is fine. The elders want to force you into the Clan Restoration Act, but, as we're both Senju, they can't. After all, I know you didn't want to be a breading tool. And, yes we found him. The Yamanaka's went through his memories and showed us that that Evangelion thing is a real monster."

Naruto looked at her. She was clearly still freaked about his new eyes. "What about Karin, my sister? Are we going to go after Orochimaru to get her back?"

Tsunade cried again from the thought of her grandchild being in the snake's hands. "We're working on it, but everything is still in chaos. Just so you know, you're not alone anymore, Naruto. I'm your grandmother, Shizune – Dan's niece – is your cousin and we will find and save your sister."

Naruto had tears in his eyes. Today had been the worst day of his life, yet, he had what he had always dreamed about. Family. It was far too much for him to take in. "Grandma. Can I have some time by myself? This is just so much to take in at once."

Tsunade wasn't used to being called grandma, just as she was sure that Naruto wasn't used to having one, so she cried and said, "I will." She gave him a grandmotherly kiss on the head before she left, saying "The last thing you need to know is that no one hates you for having the Nine Tails."

Naruto just sat there and thought about his friends, mostly Hinata. He thought she was weird with all her blushing and fainting around him and her shyness. Then it finally hit him like a ton of bricks. "She as a crush on me and is too shy to talk to me, like some kind of reverse Sakura."

Reverse Sakura was the right choice of words. Hinata was shy and got to nervous to be around her crush, let alone ask him out, while Sakura was always around and trying to ask someone – mainly Sasuke – out.

Naruto remembered Sakura. "She never cared about me. If I hadn't been so blinded by that pink haired banshee's cuteness, I might have noticed sooner, I hope."

Naruto kept crying. A girl cared about him and he spent all the time chasing a girl who only wanted Sasuke, and, if she did want him now, it was only because of his name. Sakura only hurt him time and time again while Hinata always tried to help like when she gave him that healing ointment after his fight with Kiba.

Naruto hung his head low. "I know that seeing me chase after someone who didn't even like me must have hurt you Hinata, and I'm sorry. If you still like me in that way after all of this, I promise to make it up to you. Believe it."

And, in the doorway, one Hinata Hyuga was looking in with Tsunade behind her and the girl was crying tears of joy for the first time in her life.

On the other end of the hospital…

Shinji was awake in his hospital bed, looking up at the ceiling, "Waking up to another unfamiliar ceiling. Some things never change."

Jiraiya then walked in and said, "Hi, kid. You don't know me, but I'm Jiraiya the…"

Shinji cut him off by saying, "The super pervy sage."

Jiraiya had a tick mark on his head. "Of all the memories you could have gotten from Naruto, why did it have to be that one?"

Shinji looked up at the ceiling. "Let me guess. Since I need to be able to control my half of the Nine Tails, the people in charge of this place want you to train me and help me figure out a way back home?"

Jiraiya rolled his eyes. "Yes, and you are one big buzzkill, kid. You know that?"

Shinji nodded and said, "Yes. Do you know when I can get out of here?"

Jiraiya looked down. "In a couple of days, but you're being switched to a different room tomorrow, so just get some rest kid. You've been through the ringer like the rest of us have."

Shinji just nodded as Jiraiya turned to leave.

Meanwhile, in NERV…

It had been 2 hours and Misato and yet to stop kicking and screaming at Eva-01.

Ritsuko then walked up to her and pulled the angry woman away from the purple beast and said, "Misato, stop it. Shinji wasn't absorbed by it. The radiation signature inside its cockpit matches a previously theoretical wormhole."

Misato stopped kicking and turned around to face her friend before yelling out, "WHAT!?"

Ritsuko put her hand to her ears to try and stop the ringing. "The Evangelion didn't absorbed him. It sent him somewhere by bending space and time. He could be anywhere in space, time, or he may not even be in this universe anymore. The only one who has any clue where the Eva send him is Eva-01 itself."

Misato then quickly went back to kicking the thing's head yelling for it to bring Shinji back.

But, at that moment, in the other world, Shinji fell asleep and the eyes of Eva-01 came to life, scaring the shit out of Misato who quickly hid behind Ritsuko.

Maya was up at the controls, monitoring Eva-01 and, when she looked at the screen, she quickly hit the intercom button and screamed, "SHINJI'S MIND IS SYNCHING WITH EVA-1 AND HE'S NOT IN THE PLUG! WHAT THE HELL IS GOING ON?!"

In Shinji's mind…

He was sure he was dreaming. After all, he just fell asleep in a hospital in another world. Now he was back in NERV, inside the Evangelion.

Yin Kurama then told the boy, "I have no clue how it happened, boy, but when you fell asleep you, started synching with this manmade demon. You must have some kind of link to its mind."

Shinji tried to move the Evangelion's hand to its face to look at it, but found that he was restrained. All he could think was, 'A link between this monster's mind and my own? As if I didn't have enough demons in my head.

Maya once more screamed over the intercom, "A SECOND MIND IS SYNCHING WITH EVA-01! I'M SO SCARED! I THINK I WET MYSELF!"

Shinji then saw Misato hiding behind a shaking Rits, and Misato fearfully asked, "Sh-Shinji? Is that you?"

Shinji looked at her. He felt himself crying as he whispered her name to himself, but, sadly, as Evangelion couldn't speak the Eva did nothing but look at her before it shut back down. Whatever pulled Shinji's mind to the Eva had ended.

Misato was crying and shaking as Rits, quickly fainted as she wet herself.

Shinji found himself in his mindscape, crying and beating on a wall as yin Kurama looked on at how the sight of that Misato woman had brought the boy to tears.

Within the now-shut down Eva-01's mind, Yui was sitting on a beach with her fingers interlocked, thinking, "Shinji shouldn't have found out about or used the mind link to me – accidentally or not – this soon. This is going to be bad for the scenario."

Back in NERV…

Misato was forced to leave by the Ritsuko and her underlings so that they could figure out what just happened.

Misato got home to see Asuka, throwing out Shinji's stuff and moving her things in, making the girl scream, "WHAT ARE YOU DOING?!"

Asuka smiled. "Now that Shinji-baka is gone, I'm turning his room into storage. After all, he doesn't need it anymore."

Misato growled. "You go get Shinji's things, now. He'll be back. Just you watch."

Asuka sighed. "Misato, the idiot got himself killed. It's over. Move on. He's not coming back and, besides, I'm a way better pilot then he will ever be. We don't need him."

Misato then slapped the German girl across the face. "I wasn't asking what you think, you – you spoiled brat. Shinji will be back and, also, if you're our best pilot, we're all as good as dead, seeing as you're a throw-away. You never trained in the last year and just rushed into battle. I can't believe I ever stood up for you."

Asuka rubbed her face and walked away. "That's it. I'm going to Hikari's. You just cost yourself the honor of me living here, bitch."

She then left Misato's apartment.

Misato Sat down on her couch and listened to how quiet and lonely it was in her apartment now. "Why did I believe that she was a good kid? The others are right. She's just a red devil. Now I'm alone again. I mean, I still have Pen-Pen, but he's not much to talk to."

Pen-Pen then waddled out, holding a beer, and tried to hand it to Misato, but she said, "No thanks, Pen-Pen. I'm not in the mood for a drink."

Pen-pen dropped the beer and backed away slowly, scared for his life with a look of horror upon his avian face. After all, Misato not wanting beer had to be one of the signs that the end was near.

Misato got up and recovered Shinji's things which Asuka had thrown away and the first thing she saw was a cello. For the first time, she looked at it and its case only to see that the words 'Property of Yui Ikari. Please return if found' were written on the case.

Misato cried as it clicked. "I never saw Shinji play this because it's the last thing he has of his mom.'

To be continued…