(Two weeks later)

"Thank you Lucario for everything I think I might be ready for Mewtwo." Ash said as he stood from his fighting position and slowly walked into the river to wash off as well as to relax. "You have been a good friend and great teacher Lucario. I wish you didn't have to leave but I have been here for long enough it is time i leave as well after all I can't make it to easy for Mewtwo to find me."

"To late for that Ash." said Mewtwo from behind as he floated down to the ground. "It is time I catch you and then we'll show the world that I am the true master and then I will release all those captured Pokemon one trainer at a time."

"Wait how did you find me?" asked Ash.

"You made it simple for two reasons. 1 You stayed in one place for to long and 2 you accepted my collar."Mewtwo said with a smirk as he saw the shocked look on Ash's face.

Ash and Mewtwo stare each other down Mewtwo in full confidence and Ash slightly nervous he knew the outcome of this battle against Mewtwo would decide whether or not Ash would continue on his journey a free person. The sun was high in the sky like an old western movie as a slight wind blew through the bushes Pikachu stepped into the clearing and like an unspoken signal the fight began.

Standing at a distance from each other Ash stands determined to win this fight staring into the eyes of Mewtwo after a quick skirmish between them Ash sees that Mewtwo was enjoying the fight and with a slight smile Ash used aura sphere and sent it flying at Mewtwo who countered with shadow ball. When the two orbs collided the aura sphere struggled with the shadow ball before it was over powered and ripped through but Ash didn't stand there and take the hit he was already on the move heading straight for him with his aura focused on his hands forming Scyther like sickles for an attack when Ash was close he swung his arms for a furry cutter but Mewtwo used teleport to dodge but Ash turned and delivered a devastating low kick sending Mewtwo skidding back and then Ash jumped to use high kick but Mewtwo used teleport again getting behind Ash and prepared a confuse ray and when Ash turned around he used it to both confuse and temporary blind Ash which was successful as Ash quickly recoiled from the bright multicolored light giving Mewtwo the time to prepare a shadow ball which he kept charging as Ash stumped around blind and confused flailing about throwing aura spheres in random directions hurting himself when he would fall and when he stood up for the third time Mewtwo released his attack sending Ash flying but before Ash could hit the ground he was stopped in midair by Mewtwo using his psychic power and pulled Ash to and said "You did better this time but I win." Mewtwo then proceeded to Ash against the ground several times before letting Ash drop. Pulling out a black and blue pokeball Mewtwo dropped the ball on Ash which Proceeded to suck him up like a Pokemon but Ash was unwilling to be captured so easily indicated by the ball shaking for a full minute before giving a chime indicating that Ash was caught.

"He has a destiny you know one he will have to fulfill." Lucario said to the back of Mewtwo as he walked away.

"I know that and I will allow him to be the chosen one, if he is a good boy and does any thing and everything I tell him to do." Mewtwo said looking back over his shoulder before turning back and walking away.

(Mt. Quena)

Under the island in the center of a lake on top of Mt. Quena Mewtwo lays Ash's prone body on a table where he will stay until Mewtwo thinks he is ready, using his psychic power he created some restraints to hold the boy in place. A machine was then lowered from the ceiling it didn't look like much just a simple cylinder with a small rectangular hole which shined a thin light down on Ash as the machine moved from head to a nearby computer screen a three dimensional rendering of Ash was displayed with some areas filled in with red showing Mewtwo the most damage he had done to Ash.

Looking over the computer and seeing the display Mewtwo thought to himself "Well at least I didn't hurt him as badly as last time. Still it will take time for him to heal." As he was thinking he started to walk to the stairs leading up to the surface he heard a groan of pain he didn't look back as he said. "Lay still and go back to sleep." Not even giving Ash a chance to speak Mewtwo left his underground laboratory.

(1 week later)

The sun was shining and a gentle breeze blew across the top of Mt. Quena as Mewtwo stood watching as Ash attempted to learn a new attack it wasn't going so well as Ash just didn't seem to get the process of turning his aura into fire and it kept exploding in his face.

(sigh)"You are putting to much power into the attack and not keeping focused on the fire you keep scorching yourself fire punch should not be this difficult to preform."Mewtwo suddenly said as he sat off to the side watching the progress and he was not very happy with the constant failure.

"Well it isn't to me I'm human and I have no idea how I'm supposed to do this, it took me weeks to learn how to use my aura and do furry swipe." Ash huffed with indignation thoroughly fed up with blowing himself up as he stood on weak legs that were ready to give from all the use of aura and training to make a shell of fire around his hands which were still smoking from his last attempt.

Over several days Ash was finally able to use fire punch without it burning him and Mewtwo figured it was time for a new attack but he was undecided on what it would be. Ash was doing well as Mewtwo made sure he ate regularly for a growing boy Ash has even gained a bit of muscle from all the physical training Mewtwo forced him to do and it was starting to attract more Pokemon to him at first Ash used them to get stronger as he didn't want a repeat session like the Yanmega but it was getting harder and harder to win against them but what Ash didn't know was Mewtwo had been teleporting them to see just how strong Ash was.

Once the sun was setting Mewtwo would scan Ash to make sure there was nothing wrong internally but tonight was different Mewtwo had a rather large needle filled with a strange glowing blue liquid and before he could say or ask anything everything went black for Ash. Catching Ash before he hit the ground Mewtwo put him on the table where he checks on Ash's progress he then gets a alcohol swab and cleans a spot on the elbow of the boy bringing the syringe up to Ash's arm smirking he thought to himself "With this he will be more like a Ditto and then he will give me more Pokemon." And with his psychic power holding the needle steady plunged it into the fold of Ash's arm.

Ash woke up then next morning with his head feeling fuzzy and his arm burning where Mewtwo had injected the DNA of ditto at first the burning was unbearable but within moments it stopped and his head cleared but he felt something was off and wondered just what Mewtwo had done to him this time. Within minutes of Ash waking up Pikachu entered the room and with a happy shout jumped into Ash's arms and before they knew what was happening Ash became a female Pikachu astonished and confused Ash couldn't help but scream. "What has happened to me?" Before breaking down in a depressed fit.