Clone Trooper
#01—A Statistical Anomaly
7 years prior Clone Wars
The doctors are confused about the strange anomaly that seemed to have manifested in one of the clone batches (Force abilities). Because of this anomaly, nearly all of the clones for that particular batch didn't survive, all except one died in the incubation process. This one surviving clone managed to be stablized and grow. The Kamino doctors kept the clone under close scrutiny, seeing him as a peculiar test subject that they desired to understand and study.
The clone (nicknamed Sensor) was revealed to be far more independent that nearly all of his brothers. During his training, Sensor quickly finds himself singled out among the other clones for a variety of reasons. The reason had been, of course, when it was discovered he was the first (and currently only) clone to have the ability to touch the Force like a Jedi. His Force abilities granted him heightened situational awareness during combat (especially for close-combat), incredibly powerful telekinesis, slight telepathy, and limited foresight. But the part of his training that Sensor truly fell in love with was learning to pilot starfighters, warships, and other combat vehicles. He was the best pilot of his generation and could even hold his own against some of even the older generations.
When Sensor was 7 years old (14, biologically), the Clone Wars started. Sensor found his chance to stall aboard one of the troop cruisers despite not completing his initial training. He was present for the Battle of Geonosis and was quickly singled out by not only his superiors, but the Jedi as well. The Jedi, seeing the obvious Force talent and half-learned powers that Sensor already knew, decide to place Sensor under the direct command of Obi-wan Kenobi, now that his previous apprentice Anakin had been formally made into a Knight.
That's as far as I've gotten for the basic idea. For some reason, the idea of a Force-sensitive Clone Trooper just tickled my imagination. Plus, while I'm sure a lot of the Star Wars fanatics will throw a fit, here's my formal response to their criticisms: WHO CARES? It's called FAN FICTION for a reason! ^_^
I know that growing Force-sensitive clones is supposed to extremely difficult (if not outright impossible), which is why Sensor is the first and currently only Force-user of the Clone Troopers in existence. I figure that you could use the Clone Wars series as a basic outline for the general storyline, and decide for yourself what impact Sensor's existence could cause to the general outcome of the war.