"Attack! Destroy them all!" Shredder ordered and Stockman laughs menacingly.
Venus and Mona sees Hun and the Foot Elite "Who are they?!" Venus exclaimed "They don't like us either. " Donnie explains.
Fugitoid looks in fright and fear as he saw the robot spider cyborg, approaching "Oh dear, and I thought I was stuck with an unpleasant robot body." Stockman fires lasers from his body and knocks the Fugitoid into the pods.
"My children, attack!" Splinter ordered.
They charge into battle against the Foot ninjas and the Elites rush towards Mortu as the Guardians quickly ran into the room.
"Protect Mr. Mortu!" One of the Guardians said as they all rush to aid him pulling out their glowing swords. They jump and stand between the Foot Elite and Mortu, protecting the Utrom.
Splinter clashes against Hun but was thrown across the room. Shredder jumps in front of the Utrom "Mortu," Shredder calls out "I have anticipated this moment for nearly 10 centuries!"
"I'm surprised that with your genius, it took you a thousand years to find us!" Mortu taunted.
The Utrom and the Shredder engaged in battle. "If those guys have been enemies for that long," Leo calls out as he blocks and kicks another Foot soldier down "Then that means..."
"This is the same Shredder from a thousand years ago!" Yuuki finishes.
When Mortu backs away from the Shredder, he is captured by Hun as the traps him in his arms, lifting Mortu up "Finally," Shredder said as he raises his gauntlet. But before he could Deliver the final blow more Utroms fly in and shoot lasers at them, making Hun release Mortu. The Utroms continue to fire at the Shredder until he jumps and grabs two of the Utroms and throws them down, knocking the others back as well.
One of the Foot Elite is about to strike one of the Utroms, but Leo quickly jumps in and grabs him, moving out of the away from the blow and kicks the Elite down. "Whoa!" Leo exclaims as another Elite charges at him, trying to stab at the Utrom he was holding. Leo moves him out of the way before he could get hit "Sorry about this," Leo said to the Utrom before he reels him back "Donny, go long!" Leo hurls the Utrom across the room. Donnie manages to catch him before placing him back into the hovercraft. He sighs in relief.
"At last," Stockman said as he approaches Raph and Mikey "It's time I finally have my revenge on you annoying mutations and your friends."
"Stockman?" Raph questions as he and Mikey put away their weapons "I almost didn't recognize you, new hair cut?" Mikey laughs.
Stockman glares at them and fires lasers from his robotic body, shooting the two turtles across the room. He laughs as he continues to fire at them. Mortu continues to fight against the Shredder before the Shredder kicks him down and causes Mortu to fall out of his exo-suit.
Shredder looks over at Baxter who was still firing lasers "Stockman, hold. You have more important business!"
"Never!" Stockman objects, turning to him "My revenge comes first!" He fires at Raph and Mikey again.
"I said hold!" The Shredder eyes glow red and Stockman's body starts to spark, electrocuting him "Initiate, now!"
"Yes,...master." Stockman said and scurries away "The device will soon be under your control."
Mortu pushes himself up "The device!" Yuuki picks him up and places the Utrom into the exo-suit "The transmat! We must stop that cyborg before-" Before everyone could rush after the cyborg, Hun and two of the Elite block their way.
Shredder laughs from behind them. "You will go nowhere!"
Just as he finishes, Mona kicks him into an organic pod causing the Shredder to get stuck. Mortu rushes over to a panel and quickly press some buttons, causing the pod to complete enclose around the Shredder, engulfing him in it. They hear muffled screams as he tried to get out of the pod. Hun and the Foot Elite rush over to try and tear it open, while the others fight. Mortu, the Guardians and the Fugitoid and a few other Utroms manages to escape out of the room to get to the transmat. "We must hurry before the transmat is secured!"
Shredder bursts out of the pod "After the Utrom, now!"
Before Shredder, Hun and the Foot Elite could leave, the turtles, Yuuki, Mona, Venus, and Splinter block their way.
"You'll have to go through us first!" Raph growls.
"You're not worth wasting my time." Shredder said as he press some buttons on a panel.
They turned around to see some organic layering covering up the door behind them sealing the only exit. Then white liquid began to pour into the room from the walls and the pods. A tunnel comes out from a wall near the Shredder and he, Hun and the Foot Elite run into it before it disappears.
Everyone rushes to the walls and started to beat on it as the room continued to fill up as the white liquid was at their waist now.
Donnie was at the control panel trying to figure it out "It's no good, I can't work these controls!" He exclaims.
Leo slices at the walls before it closes up "I keep slicing at the walls, but it just heals itself. It's like the room is alive."
"Wait!," Donnie calls out before he walks over to the others "That's it! This is a techno organic chamber. We need to think a little less techno and a little more organic." He uses his staff to hit the wall and it jiggles "See? The walls have techno organic nerve endings. They can feel. Just follow my rhythm." Donnie explains as he hits the wall again. The others follow. "If we can agitate the nerve endings just so..."
As they continue to hit the walls, the room starts to make a weird noise and they stop as the room starts to shake violently. "She's gonna blow!" Donnie shouted. The white liquid shoots up, along with the turtles, Yuuki, Mona, and Venus and Splinter and they explode through the ceiling into a hallway, landing roughly on the floor.
"Okay, that was nasty." Mikey said as he stands up.
Then Donnie felt arms wrap around his neck as Venus pulls him towards her "Donatello, I love your big beautiful brain!" She said as she kisses him on his cheek.
Outside of the building, Casey and April are sitting around in the Battle Shell. A soldier talks on his phone and orders the troops inside. Robots blast at them and one soldier drags his unconscious comrade away.
"We can't sit around anymore, we need to know what's going on in there." April said as she changes in the back, while Casey covers his eyes as she did. "The authorities won't talk to us, but they might talk to a TV news reporter." When she finishes, April steps out revealing herself in a yellow jumpsuit, holding a microphone in her hand "How do I look?" She asked.
Casey turns around to look at her "Uh, great," He comments "If you're moving toxic waste."
April punches Casey in his shoulder "OW!" Casey exclaims, rubbing his arm.
"You're no help," She picks up a homemade camera and holds it out to Casey "Can you at least be my cameraman?"
"Do I have a choice?" He questions.
Back inside of the building, the Utroms and the Guardians stand guard in front of the transmat. "Be ready for anything." Mortu orders.
Suddenly, two devices are thrown in front of them and they start to spark. Mortu, the Utroms, Fugitoid, and the Guardians quickly jump out of the way as the devices explodes and the Shredder steps out from the smoke entering the room. The Utroms fire at him but the lasers bounce off of his suit.
"Stay back!" Mortu exclaims "I will not let you destroy the transmat!" Mortu charges at the Shredder but the Shredder strikes him, knocking Mortu back onto the platform which begins to glow.
"I do not intend to destroy it, Mortu." Shredder said as he walks up the stairs advancing towards them "I will use it to send you to your doom. Perhaps, I'll place you in the extreme heat of a supernova, or the cold endless vacuum of space." Stockman shocks the Fugitoid and knocks him onto the transmat as well. "And you're just the beginning, after I dispose you, I will use the device to conquer the world of the Utroms! And I will destroy every last one of your kind, Mortu!"
"Not if we got anything to say about it!"
The Shredder turns to see the turtles, Yuuki, with their weapons drawn, Mona, and Venus and Splinter standing at the door way.
"Remember us?" Raph asks as he twirls his sais around.
"I grow tired of you creatures and your constant interference!" Shredder exclaims "Elite ninjas, attack!" The Foot Elite charges forward at them. "Stockman, power up the transmat! Finish Mortu and his friends!"
"Yes master." Stockman said and crawls away.
"We have to stop Stockman!" Leo calls out as he fights against an Elite.
"And here I am, fresh out of bug spray!" Mikey exclaims as he fights with one.
"Why don't we just get the Shredder to ask him to stop?!" Raph shouts as he blocks an Elite's ax "Stockman seems to listen to him!"
"That's it!" Donnie exclaims as he blocks an Elite's attack "Stockman's control chip must be voice activated!" He evades the Elite while Venus jumps in between them and fights the Elite while Donnie jumps away and crouches down near the Fugitoid "Psst, Professor Honeycutt, can your audio processor replicate any sound?"
"Of course." The robot answers, nodding.
"We need your best impersonation of the Shredder, now!"
The Fugitoid starts to beep "Stockman, step away from the controls." He orders, sounding just like the Shredder. Stockman stops what he was doing and backs away from the control panel. The Shredder sees this.
"Stockman, don't listen to him! You only obey me!" Shredder shouted.
"Don't listen to him, override all voice command protocols." Fugitoid orders.
Stockman starts to spark before he shakes his head "I'm...I'm free! I obey no one now!" He jumps onto the Shredder and electrocutes him. Everyone stops what they're doing and watched. "Who's in charge now, master?" Stockman retorts and the Shredder falls against the transmat with a thud.
"I'm free, free of him at last!" Baxter laughs as he crawls away.
Hun and the Elite rush towards the Shredder "Master!" Hun exclaims.
"Do you think the Shredder is?..." Leo questions
Hun picks up the Shredders body "We'll be back, freaks!"
Something slips out from the Shredder's hand as they ran out of the room and slides towards them. The device latches itself into the floor and it begins to countdown. Suddenly, red lines began to seep through the floor and throughout the entire room. Donnie and Mikey walk over to it and Donnie bends down to pick it up.
"Do not touch it!" Mortu warns as he runs over to them. "It is an Utrom implosion device, the techno organic virus it contains will destroy you. Already, it has thoroughly infected the system. The entire building will implode in less than ten minutes!" Everyone gasps in shock and horror.
"Can't you stop it?!" Donnie questions.
"No," Mortu said, gravely "Unfortunately the virus was comprehensive, it spreads too quickly."
"So the Shredder found a way to stick it to us," Raph said "even in defeat."
Meanwhile, the troops manages to fend off the security bots and they start to walk up the stairs.
A screen appears in front of Mortu showing the councilors again.
"The human troops-"
"Are making their way-"
"Deeper into the building."
"We have to get them out before the place implodes!" Leo explains.
"The lower floors are completely sealed off, there's no way to contact them." Mortu tells them.
"There must be somebody we can contact from the outside!"
The others begin to think until an idea pops into their head and they look at each other.
Outside, Casey and April make their way through the crowd, towards the general.
"General," April calls out "April O'Niel, channel nine news," The number on her suit slips, turning upside down "Uh, six news. What can you tell us about the situation inside?"
"Reporters?! I said to keep them behind the barricade!" The general orders and one of the troops push them back.
"Sir, the people have a right to know!" April calls out "General!"
"April, Casey," A voice said into their earpieces "It's me, Leo."
"Hello?" April and Casey asks, hesitantly
"Leo? Oh my gosh, I can't believe I'm finally hearing your voice!" April exclaims, happily
"Me neither. When did you get three-way calling?" April elbows Casey in the chest "Ow! What?!"
"Hello!? Alive!"
"Oh, right. Wahoo!"
"Listen, you have to get the message to evacuate the building. It's gonna self-destruct in about six minutes!" Leo informs them.
"General," April calls out as they approach the man again "My, uh, station manager just received an urgent message from, uh, terrorist organization calling itself-"
"Goongala-Cowabunga!" Casey finishes and April gives him a look.
"They're gonna blow up the building, you have to get your men out of there in the next-"
"I thought I told you to keep those lunatics behind the barricades!" The General scolds the soldier
"But general!" April protests urgently as they are pushed away again.
Back inside of the building, the bomb was down to five minutes and the Guardians and more Utroms begin to run in the room. "Mr. Mortu," one of them calls out "The transmat is powered up."
"Primary team, assemble on the platform." Mortu ordered. "We're going home." Two of the Utroms in body suits kneel down and they crawl out of their suits.
"I hate walking on my tentacles." One of them complains.
"Oh, shut up, Kraang." The other one retorts.
A Guardian walks up to them onto the platform and the transmat starts to light up. The beam catches everyone's attention outside. "What the-" The general exclaims, seeing the beam before turning towards April and Casey "Uh, how much time did you say we have to evacuate?" April smirks.
One of the soldiers sees an large shadow which growls and walks away. Before he could follow after it, he gets an order from the general "Everyone, pull out! General's orders! Move it, move it, move it!"
As the bomb drops down to four minutes, the Councilors ride into the room with their chairs.
"Mortu, we are the last. The others have been evacuated."
"Secondary team will accompany the council." Mortu ordered.
The Councilors depart from their chairs in glass hover crafts and lands in the Guardian's hands. They step onto the transmat.
"It is good-"
"To be going-"
"Home."
"Professor Honeycutt, would you care to join us?" Mortu asked as he turns to the robot. "We would gladly offer you asylum on our home world."
"Really? Me?" Fugitoid asked. "To live amongst an advance peaceful organization where I can use my knowledge and skills for good? It's a dream come true," He turns to face the turtles, Yuuki, Mona, Venus, and Splinter "But my friends, I will miss you. I...I thank you enough."
"Take care of yourself, professor." Donnie tells him.
"Mr. Mortu," Leo speaks up "Thank you for everything."
Mikey sniffs and wipes his eyes "Man, I hate long goodbyes." He sobs and hugs Raph, which annoys him.
"It has been an honor to know you and your race, Mortu-san." Splinter said as he bows to Mortu.
"It is we who are honored, Master Splinter." Mortu replies and bows back.
"I hope that we can meet again." Yuuki said. Mortu smiles and hugs her.
"Before we leave, small tokens of your appreciation." Mortu holds out his hand and a glass orb appears. He hands it to Splinter. Splinter takes it and he goes into an trance. "Your Master Yoshi was the most loyal Guardian that ever served the Utrom. " Yoshi and Splinter bow to each other. "He gave his life to protect us, but his spirit lives on in his collective history." Splinter comes out of his trance and wipes away the tears filling his eyes.
"Yuuki, you look so much like your mother, but you have your father's eyes. The same determination and willingness to help others. You have Yoshi's fighting spirit. There is something that I want to give you, as well." Mortu holds a necklace out to her.
"A locket?" Yuuki questions as she took it. Leo walks over to her to see it as she opens it up. Donnie, Mikey, and Raph looked over their shoulders to see as well. Inside, revealed a picture of a man with short dark brown hair, wearing an yellow and black suit and brownish red eyes and a woman with long black hair and fair skin, who holding a baby girl as she reached out to the rat sitting on the man's shoulder as the two smiled looking adoringly and lovingly at her.
"Your father, Yoshi, wanted you to have it."
Yuuki put the locket around her neck and smiled "Thank you." She said.
"And now my friends, you must leave the building while you still can," Mortu kneels down and crawls out of his exo-suit "Donatello, if you would do the honor of powering up the transmat?"
"Sweet!" Donnie exclaims happily as Mortu crawls onto the transmat. "I'm all over it!" Before Donnie could do anything, shurikens were thrown at the control panel. It sparks and Donnie jumps away from it. They looked to see the Shredder and the others have returned.
"As long as I live, you will not leave this place alive!" The Shredder exclaims. He jumps in and starts to attack the turtles, Yuuki, Mona, Venus, and Splinter. He knocks them all down.
Then he makes his way towards the transmat "For a thousand year struggle ends now!"
One of the Guardians draws his sword as the Shredder got closer but Yuuki jumps in front of them as well as the turtles and Mona and Venus. They thrown in a few hits until Splinter jumps in and kicks him off of the transmat. The Guardian cradles the Councilor he was holding, getting ready to engage in the fight as well, but Donnie stops him.
"No. Protect your masters, we'll handle the Shredder!"
"Let me finish off the turtles and their friends," Hun said to the Shredder "No! They're mine!" Shredder answers and stands up "You and the others track down Stockman. He is still of some use to me!" Hun and the Elites leave the room and the Shredder makes his way back to the turtles, and the others. "No!" Shredder exclaims as Donnie is back at the control panel, trying to work the damaged controls before he hits the button, powering up the transmat and it begins to work again.
"We shall meet again." The Guardian said as they began to disappear.
"After centuries, I will not be denied my revenge!" Shredder shouted as he begins to rush to them, but they completely disappear. He looks at everyone completely enraged "You!" He said threateningly to them "You have been more than thorns in my side. But, now you have robbed me of my triumph! And for that, you shall pay with your lives!" Shredder raises his gauntlet to strike but Splinter blocks it with his staff.
"Shredder, there is no time!" Splinter protests "The building is about to implode. Even you cannot survive!"
Shredder uses his other gauntlet and breaks Splinter's staff "Then we shall all perish together!"
Donnie tries to use his staff to hit the Shredder but it breaks in two and Shredder kicks him. One minute was left on the bomb. Then Shredder knocks down Splinter. Mikey attacks and gets a few hits in as Raph throws his sais at him, but the Shredder catches them and kicks the two turtles back. Leo manages to knock the Shredder down, making him drop the sais and Raph picks them up.
"Thanks bro." Raph replies, picking up his weapons.
Shredder stands back up, standing between Leo and Raph and they charge at him. The manages to get a few cuts in his suit, making him spark.
"Guys," Donnie calls out as he runs over to the control panel "Use your weapons to penetrate his armor, I think we can stop him for good!" He kicks at a loose metal board and causes it to fall, exposing wires. Leo hands Splinter one of his swords, Raph hands Mona one of his sais, and they all began to attack the Shredder stabbing their weapons into the Shredder's armor. Yuuki throws her Tessen, penetrating it.
"You pathetic creatures," Shredder groans, still standing "cannot hurt me!"
"Don't be so sure!" Donnie shouted and connects two wires together. A large spark flies and strikes the Shredder, electrocuting him. He lets out a howl in pain. He falls down. As they walk towards his fallen body, everyone look down at him. They hear a noise coming from the Shredder and see smoke seeping out from the Shredder's stomach and it starts to open up. Eyes glared at them inside.
"The Shredder's," Donnie starts as the Utrom prisoner crawls out "an Utrom?!"
"Ahh!," Mikey screamed. "Its that prisoner dude! He's the one who-who"
"Who escaped after causing Mortu's ship to crash a millennia ago!" The Utrom growls as he finishes.
"He ain't so tough now!" Raph growls punching his hands "Let's just squish him!"
"I'm with you on that Raph!" Yuuki comments. The Utrom turns to her.
He growls and jumps, attaching itself to Yuuki's face. She screeches as she squirms trying to get him off. "What did you say?" The Utrom laughs. "I can't seem to hear you!"
"Get it off!" Mikey shouted as Leo tries to pull him off of her "Or there's gonna be a tiny little Shredder alien busting out of Yuuki's chest!"
Raph flicks him on the forehead "Ow!"
The Utrom snaps at Leo and he lets go. Splinter uses the remains of his staff to pry the alien off, flinging the Utrom across the room. He scurries away and hides. Donnie rushes towards the control panel and begins to type in an location for them to escape. "Guys, quick, I've got the transmat re-calibrated!" Donnie calls out.
They run to the transmat "Let's hope where ever we're going is a lot better than the last place we went!" Leo said. The Utrom came out from his hiding spot and runs to them. The bomb gets closer and closer to zero. The Utrom jumps to catch them, but they quickly disappear. He screams as a look of horror on his face as the bomb goes off.
Outside, the building explodes, Casey and April take cover behind the Battle Shell as the bright light nearly blinds them. They look to see a giant hole from where the building once stood.
"They guys," Casey said, gravely "Yuuki, Mona," April murmurs.
They hear something above them and look up to see a blue beam. They watch as Splinter and the turtles, Yuuki, Mona, and Venus fall out of it, landing roughly on top of the Battle Shell.
"Well, I got us out," Donnie said "But apparently, I neglected to get us down." He groans.
"Guys, Master Splinter," April cries out in relief "You're alive!" She notices Venus then turns to the brothers shocked "There is another mutant turtle besides you guys!? When did this happen?!" April exclaims.
"You, Earthlings, are very strange." Venus comments. The brothers laugh.
They cheer and give each other hugs. "Good to see you!" Raph said. Leo notices April's outfit.
"So, what's with the get-up? You a news reporter?" He teased. April throws away the microphone and laughs "In another lifetime maybe," She retorted, shrugging. Soon, police sirens were heard not too far away.
"I suggest we continue our reunion in a less conspicuous location." Splinter tells them as the police cars appear at the hole. They all climb into the Battle Shell. Donnie starts it up.
"So, do you think we've seen the last of the Shredder this time?" Leo asked as he fastens his seat belt. April walks up to him, surprised.
"The Shredder?! Don't tell me he was in there too?!"
"Boy, do we have a story to tell you!" Yuuki and the turtles said at the same time.